Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   WM48_RS16385 Genome accession   NZ_CP014667
Coordinates   3352126..3352602 (+) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain ECONIH2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3347126..3357602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WM48_RS16360 (WM48_16340) - 3347290..3349807 (+) 2518 Protein_3160 hypothetical protein -
  WM48_RS16365 (WM48_16345) - 3349883..3350338 (+) 456 WP_000581502.1 IrmA family protein -
  WM48_RS30130 - 3350481..3350570 (+) 90 WP_112031555.1 DUF905 family protein -
  WM48_RS16375 (WM48_16355) - 3350749..3351570 (+) 822 WP_001531953.1 DUF932 domain-containing protein -
  WM48_RS16380 (WM48_16360) - 3351625..3352110 (+) 486 WP_001531954.1 antirestriction protein -
  WM48_RS16385 (WM48_16365) radC 3352126..3352602 (+) 477 WP_001186726.1 RadC family protein Machinery gene
  WM48_RS16390 (WM48_16370) - 3352665..3352886 (+) 222 WP_000692329.1 DUF987 domain-containing protein -
  WM48_RS16400 (WM48_16380) - 3353049..3353417 (+) 369 WP_001531802.1 type IV toxin-antitoxin system YeeU family antitoxin -
  WM48_RS16405 (WM48_16385) - 3353507..3353881 (+) 375 WP_000854753.1 TA system toxin CbtA family protein -
  WM48_RS16410 (WM48_16390) - 3353878..3354366 (+) 489 WP_000777541.1 DUF5983 family protein -
  WM48_RS16415 (WM48_16395) - 3354378..3354575 (+) 198 WP_000839281.1 DUF957 domain-containing protein -
  WM48_RS16420 (WM48_16400) - 3354672..3355241 (+) 570 WP_001290247.1 DUF4942 domain-containing protein -
  WM48_RS16425 (WM48_16405) - 3355583..3355753 (+) 171 Protein_3172 IS110 family transposase -
  WM48_RS16430 (WM48_16410) - 3356563..3357546 (+) 984 WP_001335608.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=149032 WM48_RS16385 WP_001186726.1 3352126..3352602(+) (radC) [Escherichia coli strain ECONIH2]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=149032 WM48_RS16385 WP_001186726.1 3352126..3352602(+) (radC) [Escherichia coli strain ECONIH2]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment