Detailed information NTG0149028

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: WM48_RS14805
• Genome accession: NZ_CP014667
• Coordinates: 3011697..3012689 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ECONIH2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3006697..3017689

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WM48_RS14785 (WM48_14775)	ygbM	3007328..3008104 (+)	777	WP_001136928.1	HPr family phosphocarrier protein	-
WM48_RS14790 (WM48_14780)	ygbN	3008193..3009557 (+)	1365	WP_000104433.1	GntP family transporter	-
WM48_RS14795 (WM48_14785)	-	3009700..3010743 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
WM48_RS14800 (WM48_14790)	-	3010968..3011519 (+)	552	WP_001179442.1	flavodoxin family protein	-
WM48_RS14805 (WM48_14795)	rpoS	3011697..3012689 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
WM48_RS14810 (WM48_14800)	nlpD	3012752..3013846 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
WM48_RS14815 (WM48_14805)	pcm	3014031..3014657 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
WM48_RS14820 (WM48_14810)	surE	3014651..3015412 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
WM48_RS14825 (WM48_14815)	truD	3015393..3016442 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
WM48_RS14830 (WM48_14820)	ispF	3016439..3016918 (-)	480	WP_001219252.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
WM48_RS14835 (WM48_14825)	ispD	3016918..3017628 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=149028 WM48_RS14805 WP_000081550.1 3011697..3012689(-) (rpoS) [Escherichia coli strain ECONIH2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=149028 WM48_RS14805 WP_000081550.1 3011697..3012689(-) (rpoS) [Escherichia coli strain ECONIH2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGTTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715