Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   WM48_RS01705 Genome accession   NZ_CP014667
Coordinates   365193..365669 (+) Length   158 a.a.
NCBI ID   WP_001186199.1    Uniprot ID   Q83W77
Organism   Escherichia coli strain ECONIH2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 360193..370669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WM48_RS01690 (WM48_01685) agn43 360333..363455 (+) 3123 WP_000820396.1 autotransporter adhesin Ag43 -
  WM48_RS01695 (WM48_01690) - 363782..364600 (+) 819 WP_001234709.1 DUF932 domain-containing protein -
  WM48_RS01700 (WM48_01695) - 364692..365177 (+) 486 WP_000213723.1 antirestriction protein -
  WM48_RS01705 (WM48_01700) radC 365193..365669 (+) 477 WP_001186199.1 RadC family protein Machinery gene
  WM48_RS01710 (WM48_01705) - 365738..365959 (+) 222 WP_000692353.1 DUF987 domain-containing protein -
  WM48_RS01720 (WM48_01715) cbeA 366122..366490 (+) 369 WP_001278232.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  WM48_RS01725 (WM48_01720) - 366580..366957 (+) 378 WP_000854700.1 TA system toxin CbtA family protein -
  WM48_RS01730 (WM48_01725) - 366954..367442 (+) 489 WP_000761726.1 DUF5983 family protein -
  WM48_RS01735 (WM48_01730) - 367454..367651 (+) 198 WP_000839247.1 DUF957 domain-containing protein -
  WM48_RS01740 (WM48_01735) - 367736..368590 (+) 855 WP_024174313.1 DUF4942 domain-containing protein -
  WM48_RS01745 (WM48_01740) - 368683..370002 (-) 1320 WP_000144686.1 site-specific integrase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17734.36 Da        Isoelectric Point: 7.6152

>NTDB_id=148992 WM48_RS01705 WP_001186199.1 365193..365669(+) (radC) [Escherichia coli strain ECONIH2]
MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=148992 WM48_RS01705 WP_001186199.1 365193..365669(+) (radC) [Escherichia coli strain ECONIH2]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q83W77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399