Detailed information NTG0148978

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AYR48_RS17360
• Genome accession: NZ_CP014642
• Coordinates: 3400985..3402010 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain BLK16
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3395985..3407010

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AYR48_RS17330 (AYR48_16710)	zapB	3396069..3396314 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
AYR48_RS17335 (AYR48_16715)	rraA	3396399..3396884 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AYR48_RS17340 (AYR48_16720)	menA	3396977..3397903 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AYR48_RS17345 (AYR48_16725)	hslU	3397970..3399301 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
AYR48_RS17350 (AYR48_16730)	hslV	3399311..3399841 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AYR48_RS17355 (AYR48_16735)	ftsN	3399934..3400893 (-)	960	WP_000068828.1	cell division protein FtsN	-
AYR48_RS17360 (AYR48_16740)	cytR	3400985..3402010 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AYR48_RS17365 (AYR48_16745)	priA	3402166..3404364 (-)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
AYR48_RS17370 (AYR48_16750)	rpmE	3404567..3404779 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
AYR48_RS17375 (AYR48_16755)	-	3404834..3405457 (-)	624	WP_000720774.1	TIGR02117 family protein	-
AYR48_RS17380 (AYR48_16760)	yiiX	3405464..3406072 (-)	609	WP_000797341.1	YiiX family permuted papain-like enzyme	-
AYR48_RS17385 (AYR48_16765)	metJ	3406256..3406573 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=148978 AYR48_RS17360 WP_000644904.1 3400985..3402010(-) (cytR) [Escherichia coli strain BLK16]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=148978 AYR48_RS17360 WP_000644904.1 3400985..3402010(-) (cytR) [Escherichia coli strain BLK16]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628