Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACG10_RS04675 Genome accession   NZ_CP011835
Coordinates   1012449..1013810 (-) Length   453 a.a.
NCBI ID   WP_089167323.1    Uniprot ID   -
Organism   Azotobacter chroococcum strain B3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1007449..1018810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG10_RS04660 (ACG10_04570) - 1009301..1010677 (+) 1377 WP_089167321.1 cache domain-containing protein -
  ACG10_RS04665 (ACG10_04575) - 1010691..1011317 (+) 627 WP_039802306.1 response regulator transcription factor -
  ACG10_RS04670 (ACG10_04580) - 1011328..1011789 (-) 462 WP_089167322.1 isoprenylcysteine carboxylmethyltransferase family protein -
  ACG10_RS04675 (ACG10_04585) radA 1012449..1013810 (-) 1362 WP_089167323.1 DNA repair protein RadA Machinery gene
  ACG10_RS04680 (ACG10_04590) - 1013882..1014142 (-) 261 WP_039802311.1 YdcH family protein -
  ACG10_RS04685 (ACG10_04595) - 1014386..1014904 (-) 519 WP_089167324.1 Hcp family type VI secretion system effector -
  ACG10_RS04690 (ACG10_04600) glyA 1015233..1016486 (-) 1254 WP_039802315.1 serine hydroxymethyltransferase -
  ACG10_RS04695 (ACG10_04605) ettA 1016801..1018465 (+) 1665 WP_039802317.1 energy-dependent translational throttle protein EttA -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48697.24 Da        Isoelectric Point: 6.8321

>NTDB_id=148909 ACG10_RS04675 WP_089167323.1 1012449..1013810(-) (radA) [Azotobacter chroococcum strain B3]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLVETLLEGAATPNGRGGWAGQQANVRTLAEVSVEELPRFSTASKELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNVAERFPALYVTGEESQQQVAMRARRLDLPQDKLKVMTETCIEAIIATA
RLEKPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAVFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAINELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDTSHMGNP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALLAAVISSLRNRPLPHDLLVFGEIGLSGEI
RPVPSGQERLKEAAKHGFKRAIVPRGNTPKEAPEGLAVIPVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=148909 ACG10_RS04675 WP_089167323.1 1012449..1013810(-) (radA) [Azotobacter chroococcum strain B3]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCCACCTTCCCCAAATGGGCCGGCCAGTGCGGCGAGTG
CGGCGCCTGGAACACCCTGGTGGAAACCCTGCTGGAGGGCGCGGCGACGCCGAACGGTCGCGGCGGCTGGGCCGGCCAGC
AGGCCAACGTCAGGACCCTGGCGGAAGTCAGCGTCGAGGAGCTGCCGCGCTTCTCCACCGCCTCCAAGGAACTCGACCGG
GTGCTCGGCGGCGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGCGACCCCGGGATCGGCAAGTCGACCATCCTCCT
GCAGACCCTGTGCAACGTCGCCGAGCGCTTCCCGGCGCTCTACGTCACCGGCGAGGAGTCCCAGCAGCAGGTCGCGATGC
GCGCCCGCCGCCTCGACCTGCCGCAGGACAAGCTCAAGGTGATGACCGAGACCTGCATCGAGGCGATCATCGCCACCGCC
CGCCTGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAGCAGCTGCAGTCGGCCCCCGGCGG
CGTCGCCCAGGTGCGCGAGAGCGCGGCGCTGCTGGTGCGCTTCGCCAAGCAGAGCGGCACGGCGGTGTTCCTGGTCGGCC
ACGTGACCAAGGAGGGCGCACTGGCCGGCCCGCGGGTGCTCGAGCACATGGTCGACACCGTGCTGTATTTCGAGGGCGAA
TCCGACGGTCGCCTGCGCCTGTTGCGGGCGGTGAAGAACCGCTTCGGCGCGATCAACGAGCTGGGCGTGTTCGGCATGAC
CGACAAGGGCCTGAAGGAGGTGTCCAACCCCTCGGCGATCTTCCTCACCCGCGCCCAGGAGGAAGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTGCAGGCGCTGGTCGACACCAGCCATATGGGCAACCCG
CGCCGCGTCACCCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGCCACGGCGGCATCCCCAC
CTACGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAGACCGCCTCCGACCTGGCGCTGCTCGCCG
CGGTGATCTCCAGCCTGCGCAACCGGCCCCTGCCCCACGATCTCCTGGTGTTCGGCGAGATCGGCCTGTCCGGCGAGATC
CGCCCGGTGCCGAGCGGCCAGGAGCGCCTCAAGGAAGCCGCCAAGCATGGTTTCAAGCGCGCCATCGTGCCCCGCGGCAA
CACGCCCAAGGAGGCGCCGGAGGGGCTGGCGGTGATTCCGGTGACGCGCCTGGAGCAGGCACTGGATGCGCTGTTCGAGT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-219)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.238

100

0.483
  radA Streptococcus mitis SK321

46.608

100

0.47
  radA Streptococcus mitis NCTC 12261

46.389

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.476

100

0.466
  radA Streptococcus pneumoniae R6

46.476

100

0.466
  radA Streptococcus pneumoniae Rx1

46.476

100

0.466
  radA Streptococcus pneumoniae D39

46.476

100

0.466

Multiple sequence alignment