Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   L103DPR2_RS02975 Genome accession   NZ_CP011834
Coordinates   616301..617869 (-) Length   522 a.a.
NCBI ID   WP_055359679.1    Uniprot ID   -
Organism   Limnohabitans sp. 103DPR2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 611301..622869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L103DPR2_RS02945 (L103DPR2_00586) - 611549..612181 (+) 633 WP_055359674.1 NnrU family protein -
  L103DPR2_RS02950 (L103DPR2_00587) - 612203..612763 (+) 561 WP_055359675.1 nuclear transport factor 2 family protein -
  L103DPR2_RS02955 (L103DPR2_00588) - 612803..613795 (+) 993 WP_082466849.1 alpha/beta hydrolase -
  L103DPR2_RS02960 (L103DPR2_00589) - 613800..614561 (-) 762 WP_055359676.1 YecA family protein -
  L103DPR2_RS02965 (L103DPR2_00590) - 614609..615052 (-) 444 WP_055359677.1 putative toxin-antitoxin system toxin component, PIN family -
  L103DPR2_RS02970 (L103DPR2_00591) - 615039..616283 (-) 1245 WP_082466692.1 THUMP domain-containing protein -
  L103DPR2_RS02975 (L103DPR2_00592) rpoN/rpoN1 616301..617869 (-) 1569 WP_055359679.1 RNA polymerase factor sigma-54 Machinery gene
  L103DPR2_RS02980 (L103DPR2_00593) lptB 617883..618641 (-) 759 WP_055359680.1 LPS export ABC transporter ATP-binding protein -
  L103DPR2_RS02985 (L103DPR2_00594) lptA 618638..619243 (-) 606 WP_055359681.1 lipopolysaccharide transport periplasmic protein LptA -
  L103DPR2_RS02990 (L103DPR2_00595) - 619359..620021 (-) 663 WP_055359682.1 thiol:disulfide interchange protein DsbA/DsbL -
  L103DPR2_RS02995 (L103DPR2_00596) - 620064..620741 (-) 678 WP_055359683.1 SPOR domain-containing protein -
  L103DPR2_RS03000 (L103DPR2_00597) argS 620780..622465 (-) 1686 WP_055359684.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 57362.78 Da        Isoelectric Point: 4.6980

>NTDB_id=148897 L103DPR2_RS02975 WP_055359679.1 616301..617869(-) (rpoN/rpoN1) [Limnohabitans sp. 103DPR2]
MKQSLSLRMSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERSTDEAPQEDFGLPEADARVSLGDRVSEAASD
AGADSRDAASESTASVSNDEAVTDVADSWDGDGSVEIAPDDSEWGTDAGARKNNTNNDSDGADAIELARGLGSLTEYLHR
QALSMRLSEIDRAALRFLIESLNDDGYLEDSLESLAQGLAGTDDIEQLEELVHRFTVALSLLQSLEPVGIGARDLGECLR
IQLKAILKDEPDHEVAAVGLKICVLPLELLAKRDFKRLAVQCGEDEGIVKQALAFITRLEPKPGRPFANAEQHVIVPDVL
VIGTRKGGEPHFRVQLNPDVMPKLRVHDIYANALRGGKGEAHLGLQQRLQEARWFIKNIQQRFDTILRVSTAIVERQRNF
FIHGELAMRPLVLREIADELGLHESTISRVTTAKYMTTPMGTFELKYFFGSGLGTDSGSAASSTAVRALIKQLVAAENPN
KPLSDNQLSEMLKEQGIDCARRTVAKYREALKIAPANLRKTL

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=148897 L103DPR2_RS02975 WP_055359679.1 616301..617869(-) (rpoN/rpoN1) [Limnohabitans sp. 103DPR2]
ATGAAGCAAAGCCTTTCCCTTCGGATGTCCCAGCACTTGGCGCTGACGCCACAGTTGCAACAATCCATTCGGCTGCTTCA
ACTCTCGACCTTAGAGCTCAGCCAAGAAGTCGAGCAAATGCTCGACGAAAACCCCTTCCTCGAGCGCAGCACCGACGAAG
CACCGCAAGAAGATTTTGGCTTGCCAGAAGCCGATGCGCGCGTCAGCTTGGGCGACCGTGTGTCAGAAGCCGCCAGCGAT
GCCGGCGCTGATTCACGCGATGCTGCCAGCGAATCCACAGCGTCCGTTTCCAATGATGAAGCCGTGACCGATGTAGCCGA
CAGCTGGGATGGCGACGGCAGCGTCGAGATTGCTCCCGACGACAGCGAATGGGGCACCGACGCCGGCGCGCGCAAGAACA
ACACCAACAACGATTCGGATGGCGCAGACGCCATTGAGTTGGCACGCGGTCTGGGCTCACTCACCGAGTATTTGCACCGA
CAGGCTTTGTCGATGCGCTTGTCCGAAATTGACCGCGCAGCCTTGCGCTTCCTCATCGAGTCTTTGAACGACGACGGTTA
TCTGGAAGACAGCCTCGAGTCTTTGGCGCAAGGCCTGGCCGGCACCGACGACATTGAGCAATTGGAAGAGTTGGTGCACC
GCTTCACGGTGGCTTTGAGCTTGCTGCAATCACTCGAACCGGTGGGCATTGGCGCACGTGATTTGGGCGAGTGCTTGCGC
ATTCAACTCAAAGCCATCTTGAAAGATGAGCCCGACCACGAAGTGGCTGCCGTAGGCCTCAAAATTTGCGTGCTGCCTTT
GGAGCTGCTGGCCAAACGCGATTTCAAACGCTTGGCGGTTCAGTGCGGTGAAGACGAAGGCATTGTCAAACAAGCGCTGG
CATTCATCACGCGCTTAGAACCCAAACCCGGTCGTCCTTTTGCCAATGCCGAGCAGCATGTCATCGTGCCCGATGTGTTG
GTCATTGGTACGCGCAAAGGGGGCGAGCCGCACTTCAGAGTTCAGCTCAACCCCGATGTGATGCCCAAACTGCGGGTGCA
CGACATTTACGCCAACGCCTTGCGCGGCGGCAAAGGCGAAGCCCATTTGGGTTTGCAACAACGCCTGCAAGAAGCGCGCT
GGTTCATCAAAAACATTCAACAGCGCTTTGACACCATTTTGCGTGTGTCGACGGCTATTGTGGAGCGTCAGCGCAATTTC
TTCATCCATGGTGAATTGGCCATGCGCCCCTTGGTGCTGCGAGAAATTGCCGATGAACTGGGCTTGCACGAGTCCACCAT
CAGCCGCGTCACCACGGCCAAGTACATGACCACGCCCATGGGCACCTTCGAGTTGAAGTATTTCTTCGGCTCGGGCCTAG
GCACCGACAGTGGCAGCGCGGCTTCCAGTACAGCCGTGCGTGCGCTCATCAAACAATTGGTGGCAGCCGAAAATCCCAAC
AAGCCGCTCTCAGACAACCAACTGTCTGAAATGCTCAAAGAACAAGGCATCGATTGCGCACGTCGCACCGTTGCCAAATA
CCGCGAGGCGCTCAAAATTGCGCCCGCCAACTTGCGTAAAACTCTGTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(152-350)

Sigma-54, DNA binding domain (Sigma54_DBD)

(365-520)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.992

100

0.525

Multiple sequence alignment