Detailed information NTG0148872

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AYL54_RS10900
• Genome accession: NZ_CP014641
• Coordinates: 2138977..2139969 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain BLK9
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2133977..2144969

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AYL54_RS10880 (AYL54_10515)	otnK	2134752..2136014 (+)	1263	WP_000590371.1	3-oxo-tetronate kinase	-
AYL54_RS10885 (AYL54_10520)	ygbL	2136011..2136649 (+)	639	WP_001278994.1	aldolase	-
AYL54_RS10890 (AYL54_10525)	ygbM	2136654..2137430 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
AYL54_RS10895 (AYL54_10530)	ygbN	2137519..2138883 (+)	1365	WP_000104459.1	GntP family transporter	-
AYL54_RS10900 (AYL54_10535)	rpoS	2138977..2139969 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AYL54_RS10905 (AYL54_10540)	nlpD	2140032..2141126 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
AYL54_RS10910 (AYL54_10545)	pcm	2141311..2141937 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AYL54_RS10915 (AYL54_10550)	surE	2141931..2142692 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AYL54_RS10920 (AYL54_10555)	truD	2142673..2143722 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AYL54_RS10925 (AYL54_10560)	ispF	2143719..2144198 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AYL54_RS10930 (AYL54_10565)	ispD	2144198..2144908 (-)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=148872 AYL54_RS10900 WP_000081550.1 2138977..2139969(-) (rpoS) [Escherichia coli strain BLK9]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=148872 AYL54_RS10900 WP_000081550.1 2138977..2139969(-) (rpoS) [Escherichia coli strain BLK9]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715