Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AB870_RS02645 Genome accession   NZ_CP011807
Coordinates   576824..578311 (-) Length   495 a.a.
NCBI ID   WP_047906826.1    Uniprot ID   A0A0H3WWU4
Organism   Pandoraea faecigallinarum strain DSM 23572     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 571824..583311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB870_RS02620 (AB870_14120) rapZ 573047..573919 (-) 873 WP_047906823.1 RNase adapter RapZ -
  AB870_RS02625 (AB870_14125) - 574090..574419 (-) 330 WP_047906824.1 PsiF family protein -
  AB870_RS02630 (AB870_14130) hprK 574589..575554 (-) 966 WP_044453802.1 HPr(Ser) kinase/phosphatase -
  AB870_RS02635 (AB870_14135) - 575634..576143 (-) 510 WP_047906825.1 PTS sugar transporter subunit IIA -
  AB870_RS02640 (AB870_14140) hpf 576326..576682 (-) 357 WP_044453807.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  AB870_RS02645 (AB870_14145) rpoN/rpoN1 576824..578311 (-) 1488 WP_047906826.1 RNA polymerase factor sigma-54 Machinery gene
  AB870_RS02650 (AB870_14150) lptB 578405..579208 (-) 804 WP_047906827.1 LPS export ABC transporter ATP-binding protein -
  AB870_RS02655 (AB870_14155) lptA 579201..579896 (-) 696 WP_047906828.1 lipopolysaccharide transport periplasmic protein LptA -
  AB870_RS02660 (AB870_14160) lptC 579893..580570 (-) 678 WP_047906829.1 LPS export ABC transporter periplasmic protein LptC -
  AB870_RS02665 (AB870_14165) - 580595..581149 (-) 555 WP_047906830.1 KdsC family phosphatase -
  AB870_RS02670 (AB870_14170) - 581161..582141 (-) 981 WP_047906831.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 55203.15 Da        Isoelectric Point: 5.1872

>NTDB_id=148825 AB870_RS02645 WP_047906826.1 576824..578311(-) (rpoN/rpoN1) [Pandoraea faecigallinarum strain DSM 23572]
MKPTLQLRTSQHLTLTPQLQQSIRLLQLSTLELQQEVEHALTQNPMLEREDDWLAGSVRVGTDGSLRSERTTPSSSSNDS
AEPANGRDETRELDGEARFDDSAQDNGSDWSLNDFARSGSASDDDDNARPQLHVDHPNLREHLLAQLRLTKAGPRDRALV
EFLIESLDEDGYLGSLLDEIQAEMPEELALETEEINAALALLQSFDPAGVGARSPAECLRLQLQRLPASNVRTLSLRIVT
DHLELLAARDYTRLRRLLGVSEDSLRAAHQLIRSLDPFPGAAYGAPQADYVVPDVLVRKQGSGWTAELNPEVMPRLRINE
MYARILRNNRNDPGTGNLQQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFTHGEIGMRPLVLREIADTLGLHESTI
SRVTTSKYMLTPFGTFELKYFFGSHVATEAGGAASSTAIRALIKQLIGAEDPQSPLSDSRIAELLAEQGFVVARRTVAKY
REAMRIPAVNLRKSL

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=148825 AB870_RS02645 WP_047906826.1 576824..578311(-) (rpoN/rpoN1) [Pandoraea faecigallinarum strain DSM 23572]
ATGAAACCGACTCTTCAACTCCGCACCTCGCAGCACCTGACCCTCACGCCGCAGTTGCAGCAATCGATCCGGTTGTTGCA
ACTGTCGACGCTCGAACTTCAACAGGAAGTCGAGCACGCCCTCACGCAGAACCCGATGCTCGAACGCGAGGACGATTGGC
TCGCGGGTTCGGTACGTGTCGGCACCGACGGGTCGCTGCGCAGCGAGCGGACCACGCCGTCGAGCAGCTCGAACGACAGC
GCCGAGCCGGCCAACGGCCGCGACGAAACCCGCGAACTCGACGGCGAAGCCCGCTTCGACGACAGCGCGCAGGACAACGG
CAGCGACTGGAGCCTGAACGACTTTGCCCGCTCGGGAAGTGCGTCGGACGACGACGACAATGCGCGCCCGCAACTCCACG
TCGATCACCCCAACCTGCGTGAACACCTGCTGGCCCAGCTGCGCCTGACCAAGGCGGGGCCGCGCGATCGCGCACTGGTC
GAATTCCTGATCGAATCGCTCGACGAAGACGGCTATCTCGGCTCGCTGCTCGACGAGATTCAGGCGGAAATGCCCGAGGA
ACTGGCGCTCGAGACCGAAGAGATCAACGCCGCGCTGGCACTGCTGCAAAGTTTCGACCCGGCGGGCGTGGGTGCGCGCA
GCCCCGCCGAATGCCTGCGTCTGCAACTCCAGCGGCTGCCGGCAAGCAACGTGCGCACCCTATCGCTTCGCATCGTCACC
GATCACCTGGAATTGCTCGCCGCGCGCGACTACACCCGGCTGCGCCGCCTGCTGGGCGTGAGCGAAGACAGCCTGCGCGC
CGCCCATCAGCTCATTCGTTCGCTCGATCCGTTCCCGGGGGCCGCTTACGGTGCGCCGCAGGCCGACTACGTTGTGCCCG
ACGTACTCGTGCGCAAACAAGGCAGCGGCTGGACGGCCGAGCTCAATCCGGAGGTCATGCCGCGTCTGCGCATCAACGAA
ATGTACGCGCGGATCCTGCGAAACAACCGGAACGATCCCGGTACGGGCAACCTCCAACAGCAGTTGCAGGAAGCGCGCTG
GCTTATCAAGAACATCCAGCAACGCTTCGATACGATCCTGCGCGTGGCGCAGGCCATTGTCGAGCGTCAAAAGAACTTCT
TCACGCATGGCGAAATCGGCATGCGGCCCTTGGTTTTACGCGAGATTGCTGATACGCTGGGTTTACATGAATCCACGATT
TCACGGGTGACGACGAGTAAGTACATGCTCACTCCATTTGGGACCTTCGAGCTTAAGTACTTCTTCGGATCGCACGTGGC
AACGGAAGCCGGAGGCGCTGCGTCATCGACCGCTATCCGCGCACTCATCAAGCAACTCATAGGAGCAGAAGACCCGCAGA
GCCCCCTTTCCGATAGCCGAATCGCGGAACTGCTGGCAGAGCAAGGTTTTGTGGTGGCGCGGCGAACGGTCGCGAAATAC
CGCGAGGCCATGCGAATTCCCGCAGTGAACTTGCGCAAATCTTTGTAG

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(338-493)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(133-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.663

100

0.695

Multiple sequence alignment