Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   VVCECT4999_RS02070 Genome accession   NZ_CP014636
Coordinates   412957..415779 (-) Length   940 a.a.
NCBI ID   WP_026050227.1    Uniprot ID   -
Organism   Vibrio vulnificus strain CECT 4999     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 407957..420779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVCECT4999_RS02055 (VVCECT4999_02030) lysC 408077..409426 (-) 1350 WP_039449559.1 lysine-sensitive aspartokinase 3 -
  VVCECT4999_RS02060 (VVCECT4999_02035) - 409941..411062 (+) 1122 WP_039449554.1 pyridoxal-phosphate-dependent aminotransferase family protein -
  VVCECT4999_RS02065 (VVCECT4999_02040) - 411127..412890 (-) 1764 WP_039449551.1 PglL family O-oligosaccharyltransferase -
  VVCECT4999_RS02070 (VVCECT4999_02045) uvrA 412957..415779 (-) 2823 WP_026050227.1 excinuclease ABC subunit UvrA Machinery gene
  VVCECT4999_RS02075 (VVCECT4999_02050) galU 415922..416794 (-) 873 WP_017420065.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VVCECT4999_RS02080 (VVCECT4999_02055) qstR 416980..417627 (-) 648 WP_017420064.1 response regulator transcription factor Regulator
  VVCECT4999_RS02085 (VVCECT4999_02060) ssb 417927..418466 (+) 540 WP_011079389.1 single-stranded DNA-binding protein Machinery gene
  VVCECT4999_RS02090 (VVCECT4999_02065) csrD 418617..420614 (+) 1998 WP_038964215.1 RNase E specificity factor CsrD -

Sequence

Protein


Download         Length: 940 a.a.        Molecular weight: 104003.36 Da        Isoelectric Point: 6.4491

>NTDB_id=148765 VVCECT4999_RS02070 WP_026050227.1 412957..415779(-) (uvrA) [Vibrio vulnificus strain CECT 4999]
MDKIEVRGARTHNLKNVNLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEHQVPLAAQTISQMVDKVLELPEGAKMMLLAPIVKERKG
EHVKTLENLAAQGFIRARIDGETCDLTDPPTLELHKKHTIEVVVDRFKVRSDLQQRLAESFETALELSGGIAVIAPMEGD
GEESVFSANFACPHCGYSMQELEPRLFSFNNPAGACGTCDGLGVQQYFDPDRVIQDANLSLAQGAIRGWDQKNYYYFQML
TSLAEHYDFDLHVPFNSLSKRIQEVILKGSGRTEIEFKYINDRGDIRLKRHPFEGILNTLERRYRDTESNSVREELVKYI
STKPCASCGGTRLRLEARNVFINDTTLPQIVELSIADALTFFATLKLDGQRAQIAEKVMKEINDRLQFLVNVGLNYLNLS
RSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLKTLTHLRDLGNTVLVVEHDEDAIRCADHVIDIG
PGAGVHGGQVVAEGTMAEILANPDSLTGQYLSGAKQIIVPTQRTPRDKNKTVELIGASGNNLKDVNLSVPVGLFSCITGV
SGSGKSTLINDTFFKIAHTQLNGATTAQPAPYKSIKGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFSGTQES
RSRGYKPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVHYKGKSIDEVLEMTVEDARDFFD
PVPVIARKLQTLMDVGLSYIRLGQAATTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLHFHDIQQLLTVLHRLRDH
GNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGEIIAQGTPEDVAQIEGSHTARFLKPMLK

Nucleotide


Download         Length: 2823 bp        

>NTDB_id=148765 VVCECT4999_RS02070 WP_026050227.1 412957..415779(-) (uvrA) [Vibrio vulnificus strain CECT 4999]
ATGGACAAGATAGAAGTTCGCGGAGCACGTACCCATAATCTCAAAAATGTTAATCTCACTATCCCACGAGATAAGTTGAT
CGTCATTACTGGCTTATCGGGTTCAGGGAAATCTTCTTTGGCCTTTGATACCCTTTACGCTGAAGGTCAACGACGTTATG
TAGAATCCCTGTCAGCCTACGCTCGCCAGTTTCTCTCTTTGATGGAAAAGCCCGATGTTGACCACATTGAAGGCCTCTCG
CCAGCAATTTCTATCGAGCAGAAATCCACCTCACACAACCCGCGTTCAACCGTAGGGACCATCACAGAAGTGTATGACTA
CCTTCGCCTACTGTATGCCCGCGTTGGTGAGCCTCGCTGTCCTGAACATCAAGTCCCTTTAGCCGCTCAAACCATTAGCC
AAATGGTCGACAAAGTTCTGGAGCTGCCTGAAGGTGCCAAAATGATGTTGCTCGCCCCCATAGTAAAAGAGCGCAAAGGC
GAACACGTTAAAACATTAGAGAACCTTGCTGCTCAAGGTTTTATCCGTGCACGTATTGACGGAGAGACCTGTGACCTCAC
CGATCCACCAACGCTAGAGTTACACAAAAAGCACACCATTGAAGTGGTGGTTGACCGCTTTAAAGTGCGTAGCGATTTAC
AACAAAGACTCGCAGAGTCCTTTGAAACGGCACTGGAACTCTCAGGCGGCATCGCTGTGATTGCCCCTATGGAGGGTGAC
GGTGAAGAGAGCGTTTTTTCCGCCAATTTTGCGTGTCCCCACTGTGGTTATAGTATGCAAGAGCTTGAGCCACGTTTGTT
CTCGTTCAATAACCCAGCCGGTGCATGTGGTACTTGTGATGGCCTCGGGGTACAACAATATTTTGATCCTGACCGAGTGA
TTCAAGATGCCAATTTAAGTCTTGCGCAAGGGGCGATTCGTGGTTGGGATCAGAAAAACTATTACTATTTCCAAATGCTC
ACATCGCTGGCTGAGCATTACGATTTCGATTTACATGTCCCTTTTAACTCGCTTTCAAAACGCATCCAAGAAGTGATCTT
AAAAGGCTCTGGGCGCACTGAAATCGAATTTAAGTACATCAACGATCGAGGCGATATTCGTCTAAAACGTCATCCATTTG
AAGGCATTCTCAATACACTCGAACGCCGTTATCGCGACACAGAATCTAACTCGGTACGAGAGGAGTTGGTAAAATATATC
TCCACCAAACCTTGCGCCAGTTGTGGCGGAACACGTCTGCGCCTAGAAGCTCGCAATGTGTTTATTAATGACACGACATT
GCCGCAAATCGTCGAGTTGAGTATCGCTGATGCATTGACCTTTTTCGCCACCTTAAAACTTGACGGGCAGCGAGCTCAAA
TTGCTGAGAAGGTCATGAAAGAGATCAACGATCGACTGCAGTTTTTAGTCAATGTTGGCCTCAATTATTTGAACTTGTCT
CGCAGCGCTGAAACCTTGTCTGGTGGCGAAGCACAGCGTATTCGTCTGGCTAGTCAGATCGGTGCCGGTTTGGTCGGCGT
GATGTACGTGCTCGATGAACCATCAATAGGCCTTCACCAGCGTGACAATGAGCGCTTACTCAAAACACTGACGCACTTAC
GCGATCTCGGCAATACCGTATTAGTCGTAGAGCATGATGAAGATGCGATTCGTTGTGCCGACCATGTGATTGACATTGGC
CCTGGTGCTGGCGTACATGGTGGCCAAGTGGTTGCCGAAGGAACAATGGCCGAGATTCTCGCCAATCCAGATTCCTTGAC
CGGACAATACTTAAGCGGTGCCAAGCAGATTATTGTGCCGACCCAACGCACACCAAGAGATAAGAACAAAACGGTTGAAC
TCATTGGAGCCAGTGGCAACAACCTTAAAGACGTCAATCTTTCGGTGCCTGTCGGGCTATTCAGTTGTATCACCGGGGTT
TCTGGTTCAGGTAAATCAACACTGATTAACGACACCTTCTTCAAAATTGCGCATACTCAACTCAATGGAGCGACCACTGC
TCAACCAGCGCCTTATAAGTCTATTAAAGGCTTAGAGCATTTTGATAAGGTCATCGATATCGACCAGAGCCCGATAGGTC
GCACACCGCGTTCGAATCCAGCGACCTATACGGGGATTTTCACTCCGATTCGAGAGCTGTTCTCCGGCACCCAAGAGTCT
CGTTCACGTGGCTATAAGCCAGGGCGTTTCAGCTTTAACGTTCGTGGTGGCCGCTGTGAAGCTTGCCAAGGTGATGGTGT
TATCAAGGTTGAAATGCATTTCCTACCCGATGTGTACGTGCCTTGTGATGTGTGTAAGGGCAAGCGCTACAACCGAGAAA
CGTTAGAAGTCCACTATAAAGGGAAGAGCATTGATGAAGTTCTGGAAATGACGGTGGAAGATGCTCGAGACTTTTTCGAC
CCAGTTCCCGTCATTGCGCGCAAGTTGCAAACCTTAATGGATGTTGGTCTTTCTTATATCCGTTTAGGTCAAGCGGCCAC
CACCCTCTCTGGCGGTGAAGCACAGCGGGTGAAACTGGCCCGTGAGTTGTCCAAACGCGATACGGGAAAAACCCTTTATA
TTTTGGATGAACCAACGACGGGCCTACACTTCCACGATATCCAGCAACTTTTGACCGTATTGCATCGCTTGCGCGATCAT
GGCAACACCGTTGTCGTGATTGAGCATAATTTAGATGTGATCAAAACGGCCGACTGGATCATCGACTTAGGTCCAGAAGG
CGGCCAAGGTGGAGGGGAAATCATTGCTCAAGGAACACCTGAAGATGTGGCGCAGATCGAAGGTTCGCATACCGCACGCT
TCCTTAAGCCTATGTTGAAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(622-859)

UvrA DNA-binding domain (UvrA_DNA-bind)

(289-396)

UvrA interaction domain (UvrA_inter)

(130-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.962

100

0.581
  uvrA Streptococcus pneumoniae TIGR4

57.962

100

0.581
  uvrA Streptococcus pneumoniae D39

57.962

100

0.581

Multiple sequence alignment