Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABT55_RS10020 Genome accession   NZ_CP011798
Coordinates   2143406..2144032 (+) Length   208 a.a.
NCBI ID   WP_047955310.1    Uniprot ID   -
Organism   Enterobacter ludwigii strain UW5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2138406..2149032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABT55_RS10000 (ABT55_09980) - 2138800..2140560 (-) 1761 WP_047955309.1 Lon protease family protein -
  ABT55_RS10005 (ABT55_09985) matP 2140747..2141199 (+) 453 WP_014169429.1 macrodomain Ter protein MatP -
  ABT55_RS10010 (ABT55_09990) ompA 2141269..2142324 (-) 1056 WP_020884794.1 porin OmpA -
  ABT55_RS10015 (ABT55_09995) sulA 2142679..2143188 (-) 510 WP_032677816.1 SOS-induced cell division inhibitor SulA -
  ABT55_RS10020 (ABT55_10000) sxy/tfoX 2143406..2144032 (+) 627 WP_047955310.1 TfoX/Sxy family DNA transformation protein Regulator
  ABT55_RS10025 (ABT55_10005) yccS 2143989..2146151 (-) 2163 WP_020884791.1 YccS family putative transporter -
  ABT55_RS10030 (ABT55_10010) - 2146171..2146617 (-) 447 WP_047955311.1 YccF domain-containing protein -
  ABT55_RS10035 (ABT55_10015) helD 2146741..2148795 (+) 2055 WP_047955312.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23836.33 Da        Isoelectric Point: 8.8980

>NTDB_id=148765 ABT55_RS10020 WP_047955310.1 2143406..2144032(+) (sxy/tfoX) [Enterobacter ludwigii strain UW5]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITDEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRQELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=148765 ABT55_RS10020 WP_047955310.1 2143406..2144032(+) (sxy/tfoX) [Enterobacter ludwigii strain UW5]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGGGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGATGGGGAACTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCGTCATTTTTAACCCTGATGAAACGGGGTCGTCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATCACTGATGAAGAGACGCTGCGGGAGCTGGGGGCCCGTGCGAGCTGGCTGAAGATGCGGGCGAAGAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCATTGGAAGGGGCCATCGCCGGACTTCATGAAGCGGCACTCCCGGCGGGAAT
TCGCCAGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.606

97.596

0.582

Multiple sequence alignment