Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BCV59_RS22195 Genome accession   NZ_CP014583
Coordinates   4132779..4133294 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain CFSAN004176     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4127779..4138294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV59_RS22150 (BCV59_21060) csrA 4128366..4128551 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  BCV59_RS22180 (BCV59_21090) yqaB 4130009..4130575 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BCV59_RS22185 (BCV59_21095) yqaA 4130572..4131000 (+) 429 WP_001287457.1 YqaA family protein -
  BCV59_RS22190 (BCV59_21100) gshA 4131073..4132629 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  BCV59_RS22195 (BCV59_21105) luxS 4132779..4133294 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  BCV59_RS22200 (BCV59_21110) emrB 4133358..4134896 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  BCV59_RS22205 (BCV59_21115) emrA 4134913..4136085 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BCV59_RS22210 (BCV59_21120) emrR 4136212..4136742 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BCV59_RS22215 (BCV59_21125) ygaH 4136833..4137168 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  BCV59_RS22220 (BCV59_21130) ygaZ 4137158..4137895 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=148740 BCV59_RS22195 WP_001130211.1 4132779..4133294(+) (luxS) [Escherichia coli strain CFSAN004176]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=148740 BCV59_RS22195 WP_001130211.1 4132779..4133294(+) (luxS) [Escherichia coli strain CFSAN004176]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731