Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BCV59_RS20385 Genome accession   NZ_CP014583
Coordinates   3778032..3778508 (-) Length   158 a.a.
NCBI ID   WP_069357464.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN004176     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3773032..3783508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV59_RS20345 (BCV59_19255) gspL 3773301..3774479 (+) 1179 WP_024226662.1 type II secretion system protein GspL -
  BCV59_RS20350 (BCV59_19260) yghD 3774481..3775017 (+) 537 WP_000942793.1 GspM family type II secretion system protein YghD -
  BCV59_RS20355 (BCV59_19265) - 3775347..3776189 (-) 843 WP_069357459.1 DUF4942 domain-containing protein -
  BCV59_RS20360 (BCV59_19270) - 3776274..3776465 (-) 192 WP_069357460.1 DUF957 domain-containing protein -
  BCV59_RS31225 (BCV59_19275) - 3776477..3776841 (-) 365 Protein_3677 DUF5983 family protein -
  BCV59_RS20370 (BCV59_19280) - 3776838..3777215 (-) 378 WP_069357461.1 TA system toxin CbtA family protein -
  BCV59_RS20375 (BCV59_19285) - 3777305..3777673 (-) 369 WP_069357462.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BCV59_RS20380 (BCV59_19290) - 3777748..3777969 (-) 222 WP_069357463.1 DUF987 domain-containing protein -
  BCV59_RS20385 (BCV59_19295) radC 3778032..3778508 (-) 477 WP_069357464.1 RadC family protein Machinery gene
  BCV59_RS20390 (BCV59_19300) - 3778524..3779009 (-) 486 WP_069357465.1 antirestriction protein -
  BCV59_RS31855 - 3780483..3780623 (+) 141 Protein_3684 IS4 family transposase -
  BCV59_RS20410 (BCV59_19320) - 3780612..3781346 (+) 735 WP_249528152.1 IS4 family transposase -
  BCV59_RS31860 - 3781511..3782074 (+) 564 Protein_3686 IS481 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17633.30 Da        Isoelectric Point: 7.6542

>NTDB_id=148733 BCV59_RS20385 WP_069357464.1 3778032..3778508(-) (radC) [Escherichia coli strain CFSAN004176]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALHHNAAAVVLVHNHPSGEVTPSKADRLITERLIQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=148733 BCV59_RS20385 WP_069357464.1 3778032..3778508(-) (radC) [Escherichia coli strain CFSAN004176]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGCACCACAATGCCGCTGCCGTGGTGCTGGTACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGATACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.982

71.519

0.386

Multiple sequence alignment