Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BCV59_RS19580 Genome accession   NZ_CP014583
Coordinates   3629870..3630346 (-) Length   158 a.a.
NCBI ID   WP_001186728.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN004176     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3624870..3635346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV59_RS19540 (BCV59_18450) mug 3626235..3626741 (-) 507 WP_069357448.1 G/U mismatch-specific DNA glycosylase -
  BCV59_RS19550 (BCV59_18460) - 3627041..3627886 (-) 846 WP_001274557.1 DUF4942 domain-containing protein -
  BCV59_RS19555 (BCV59_18465) - 3627971..3628168 (-) 198 WP_000772026.1 DUF957 domain-containing protein -
  BCV59_RS19560 (BCV59_18470) - 3628188..3628676 (-) 489 WP_001054228.1 DUF5983 family protein -
  BCV59_RS19565 (BCV59_18475) - 3628673..3629053 (-) 381 WP_000854687.1 TA system toxin CbtA family protein -
  BCV59_RS19570 (BCV59_18480) - 3629142..3629510 (-) 369 WP_001443392.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BCV59_RS19575 (BCV59_18485) - 3629586..3629807 (-) 222 WP_000692312.1 DUF987 domain-containing protein -
  BCV59_RS19580 (BCV59_18490) radC 3629870..3630346 (-) 477 WP_001186728.1 RadC family protein Machinery gene
  BCV59_RS19585 (BCV59_18495) - 3630362..3630835 (-) 474 WP_001444656.1 antirestriction protein -
  BCV59_RS19590 (BCV59_18500) - 3630929..3631174 (-) 246 WP_000680587.1 hypothetical protein -
  BCV59_RS19595 (BCV59_18505) - 3631174..3631614 (-) 441 Protein_3533 DUF932 domain-containing protein -
  BCV59_RS19600 (BCV59_18510) - 3631733..3633511 (-) 1779 WP_001243195.1 reverse transcriptase/maturase family protein -
  BCV59_RS19605 (BCV59_18515) - 3634024..3634404 (-) 381 Protein_3535 DUF932 domain-containing protein -
  BCV59_RS19610 (BCV59_18520) - 3634624..3635034 (-) 411 WP_000848829.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17674.35 Da        Isoelectric Point: 7.2020

>NTDB_id=148728 BCV59_RS19580 WP_001186728.1 3629870..3630346(-) (radC) [Escherichia coli strain CFSAN004176]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLLTERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=148728 BCV59_RS19580 WP_001186728.1 3629870..3630346(-) (radC) [Escherichia coli strain CFSAN004176]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGAGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGTTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATTAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTCTCACCGAACGTCTGGTACAGGCACTGGCCCTGG
TTGACATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.982

71.519

0.386

Multiple sequence alignment