Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BCV59_RS16510 Genome accession   NZ_CP014583
Coordinates   3012270..3012938 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain CFSAN004176     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3007270..3017938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV59_RS16480 (BCV59_15390) yicC 3007289..3008152 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  BCV59_RS16485 (BCV59_15395) rph 3008279..3008995 (+) 717 WP_001247089.1 ribonuclease PH -
  BCV59_RS16490 (BCV59_15400) pyrE 3009061..3009702 (+) 642 WP_000806182.1 orotate phosphoribosyltransferase -
  BCV59_RS16495 (BCV59_15405) slmA 3009739..3010335 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  BCV59_RS16500 (BCV59_15410) dut 3010442..3010900 (-) 459 WP_000976070.1 dUTP diphosphatase -
  BCV59_RS16505 (BCV59_15415) coaBC 3010878..3012098 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BCV59_RS16510 (BCV59_15420) radC 3012270..3012938 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  BCV59_RS16515 (BCV59_15425) rpmB 3013155..3013391 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  BCV59_RS16520 (BCV59_15430) rpmG 3013412..3013579 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  BCV59_RS16525 (BCV59_15435) mutM 3013677..3014486 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  BCV59_RS16530 (BCV59_15440) coaD 3014525..3015004 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  BCV59_RS16535 (BCV59_15445) waaA 3015012..3016289 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  BCV59_RS16540 (BCV59_15450) rfaQ 3016702..3017760 (+) 1059 WP_000360406.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=148718 BCV59_RS16510 WP_001297375.1 3012270..3012938(+) (radC) [Escherichia coli strain CFSAN004176]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=148718 BCV59_RS16510 WP_001297375.1 3012270..3012938(+) (radC) [Escherichia coli strain CFSAN004176]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGGGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496