Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB688_RS24125 Genome accession   NZ_CP011789
Coordinates   5372756..5374123 (-) Length   455 a.a.
NCBI ID   WP_063546142.1    Uniprot ID   -
Organism   Pseudomonas putida strain PC2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5367756..5379123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB688_RS24110 (AB688_24135) - 5368118..5370787 (-) 2670 WP_196759915.1 TonB-dependent receptor -
  AB688_RS24115 (AB688_24140) - 5371122..5372111 (-) 990 WP_063546140.1 FecR family protein -
  AB688_RS24120 (AB688_24145) - 5372180..5372683 (-) 504 WP_063546141.1 RNA polymerase sigma factor -
  AB688_RS24125 (AB688_24150) radA 5372756..5374123 (-) 1368 WP_063546142.1 DNA repair protein RadA Machinery gene
  AB688_RS24130 (AB688_24155) mscL 5374303..5374716 (+) 414 WP_054894040.1 large-conductance mechanosensitive channel protein MscL -
  AB688_RS24135 (AB688_24160) - 5374759..5375535 (-) 777 WP_054894039.1 ferredoxin--NADP reductase -
  AB688_RS24140 (AB688_24165) - 5375740..5376453 (+) 714 WP_063546143.1 autoinducer binding domain-containing protein -
  AB688_RS24145 (AB688_24170) - 5376545..5377669 (+) 1125 WP_063546144.1 methyltransferase -
  AB688_RS24150 (AB688_24175) - 5377868..5378824 (-) 957 WP_063545967.1 IS110 family transposase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48727.15 Da        Isoelectric Point: 6.8985

>NTDB_id=148686 AB688_RS24125 WP_063546142.1 5372756..5374123(-) (radA) [Pseudomonas putida strain PC2]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPAGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATQMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIA
TARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=148686 AB688_RS24125 WP_063546142.1 5372756..5374123(-) (radA) [Pseudomonas putida strain PC2]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAATGGGCCGGCCAGTGTGGCGAATG
CGGCGCCTGGAACACCCTGGTCGAGACCATGATCGAAAGCGGCGGCGCTGCAGCGCCTGCCGGGCGTGCGGGCTGGACCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTGAGTGTCGAGGAGATCCCGCGCTTCACCACCAGCAGCACCGAGCTT
GACCGTGTGCTCGGCGGCGGCCTGGTCGATGGTTCGGTGGTGCTGATTGGCGGTGACCCGGGTATCGGCAAGTCCACCAT
CCTGCTGCAGACCCTGTGCAACATCGCCACGCAGATGCCTGCGCTGTACGTCACTGGCGAGGAGTCGCAGCAGCAGGTGG
CCATGCGTTCGCGGCGCCTGGGCCTGCCCCAGGACCAGCTCAAGGTGATGACCGAAACCTGCATTGAAACCATCATCGCC
ACGGCGCGGGTGGAAAAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAACAGCTGCAATCGGCTCC
CGGTGGCGTGGCCCAGGTGCGCGAGAGCACGGCGCTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TTGGCCACGTGACCAAAGAGGGCTCGCTGGCAGGCCCGCGGGTACTCGAGCACATGGTCGACACCGTGCTGTATTTCGAG
GGCGAATCGGACGGACGCCTGCGCCTGCTGCGAGCGGTGAAGAACCGTTTCGGCGCGGTCAACGAGCTGGGTGTGTTCGG
CATGACCGACCGTGGCCTGAAGGAGGTCTCCAACCCTTCGGCGATCTTCCTCAACCGCACCCAGGAAGAGGTGCCGGGCA
GCGTGGTGATGGCCACCTGGGAGGGCACCCGGCCGATGCTGGTCGAGGTGCAGGCGCTGGTCGACGACAGCCACCTGGCC
AACCCGCGACGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCGATGTTGCTGGCGGTGTTGCACCGCCACGGCGGCAT
TCCCACCCATGACCAGGACGTGTTCCTAAACGTGGTCGGCGGGGTCAAGGTGCTCGAGACCGCCTCTGACCTGGCGCTGC
TCGCAGCGGTAATGTCGAGCCTGCGCAACCGCCCGTTGGCCCATGGCCTGCTGGTGTTCGGCGAGATCGGTCTTTCTGGC
GAGGTGCGTCCGGTGCCCAGCGGCCAGGAGCGCCTGAAGGAGGCGGCCAAGCATGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAACGCCCCCAAGGAATCGCCGGCAGGCTTGCAGGTGATTGCGGTGACGCGTCTGGAGCAGGCCCTGGACGCACTGT
TCGAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

100

0.49
  radA Streptococcus mitis NCTC 12261

45.969

100

0.464
  radA Streptococcus pneumoniae D39

46.154

100

0.462
  radA Streptococcus pneumoniae TIGR4

46.154

100

0.462
  radA Streptococcus mitis SK321

46.154

100

0.462
  radA Streptococcus pneumoniae R6

46.154

100

0.462
  radA Streptococcus pneumoniae Rx1

46.154

100

0.462

Multiple sequence alignment