Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BCV59_RS06750 Genome accession   NZ_CP014583
Coordinates   1019443..1020072 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain CFSAN004176     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1014443..1025072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV59_RS06735 (BCV59_05640) helD 1014685..1016739 (-) 2055 WP_000420537.1 DNA helicase IV -
  BCV59_RS06740 (BCV59_05645) yccF 1016862..1017308 (+) 447 WP_001261235.1 YccF domain-containing protein -
  BCV59_RS06745 (BCV59_05650) yccS 1017318..1019480 (+) 2163 WP_123003293.1 YccS family putative transporter -
  BCV59_RS06750 (BCV59_05655) sxy/tfoX 1019443..1020072 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BCV59_RS06755 (BCV59_05660) sulA 1020291..1020800 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  BCV59_RS06765 (BCV59_05670) ompA 1021157..1022197 (+) 1041 WP_000750416.1 porin OmpA -
  BCV59_RS06770 (BCV59_05675) matP 1022273..1022725 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  BCV59_RS06775 (BCV59_05680) ycbZ 1022911..1024671 (+) 1761 WP_000156532.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=148683 BCV59_RS06750 WP_000839153.1 1019443..1020072(-) (sxy/tfoX) [Escherichia coli strain CFSAN004176]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=148683 BCV59_RS06750 WP_000839153.1 1019443..1020072(-) (sxy/tfoX) [Escherichia coli strain CFSAN004176]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1