Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   AYM92_RS08660 Genome accession   NZ_CP014542
Coordinates   1642892..1643371 (-) Length   159 a.a.
NCBI ID   WP_229021993.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain STAB14018     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1637892..1648371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYM92_RS08640 (AYM92_08355) - 1638061..1638666 (-) 606 WP_002982799.1 response regulator -
  AYM92_RS08645 (AYM92_08360) - 1638647..1640209 (-) 1563 WP_076639458.1 hypothetical protein -
  AYM92_RS08650 (AYM92_08365) - 1640249..1642156 (-) 1908 WP_076639459.1 FtsX-like permease family protein -
  AYM92_RS08655 (AYM92_08370) - 1642158..1642895 (-) 738 WP_076639460.1 ABC transporter ATP-binding protein -
  AYM92_RS08660 (AYM92_08375) comA/nlmT 1642892..1643371 (-) 480 WP_229021993.1 ATP-binding cassette domain-containing protein Regulator
  AYM92_RS08665 (AYM92_08380) - 1643427..1645052 (-) 1626 Protein_1617 DUF4135 domain-containing protein -
  AYM92_RS08670 (AYM92_08385) - 1645136..1645291 (-) 156 WP_002982773.1 type A2 lanthipeptide -
  AYM92_RS08675 (AYM92_08390) lacG 1645794..1647200 (-) 1407 WP_076639462.1 6-phospho-beta-galactosidase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 18505.10 Da        Isoelectric Point: 6.3350

>NTDB_id=148657 AYM92_RS08660 WP_229021993.1 1642892..1643371(-) (comA/nlmT) [Streptococcus pyogenes strain STAB14018]
MFDGDVMYNISLGRESVSGEQVIETCKRVSLYEDIRSMPMKFHTPLFRDNPSLSGGQKQRISLARELVTTPRILVLDEPT
SALDVKTERIIQKNVEALHCTRVLVTHRLNTVEKADKILIMDNGKIIDYGSHHCLYKNNEYYRDLYDSYMNNYQEEEIK

Nucleotide


Download         Length: 480 bp        

>NTDB_id=148657 AYM92_RS08660 WP_229021993.1 1642892..1643371(-) (comA/nlmT) [Streptococcus pyogenes strain STAB14018]
ATATTTGATGGGGATGTGATGTATAACATTTCGCTAGGGAGAGAATCTGTTTCAGGAGAACAGGTTATTGAAACTTGTAA
AAGGGTATCACTATATGAGGATATCAGGAGTATGCCAATGAAGTTTCATACCCCACTTTTTCGAGACAATCCATCACTAT
CTGGGGGGCAAAAACAACGAATTTCTCTAGCAAGAGAGTTAGTAACTACCCCTAGAATCTTAGTTCTTGATGAACCTACA
TCAGCTTTAGATGTAAAAACTGAAAGAATAATCCAAAAAAATGTTGAGGCTTTACATTGTACGAGGGTTTTGGTTACCCA
TAGACTTAATACAGTTGAAAAAGCTGATAAGATTTTAATAATGGATAATGGGAAAATTATTGACTATGGTAGTCATCATT
GTTTATATAAAAATAATGAGTACTATCGTGATTTATATGATTCGTACATGAACAACTATCAGGAGGAAGAGATAAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(34-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

39.597

93.711

0.371
  rcrQ Streptococcus mutans UA159

39.333

94.34

0.371

Multiple sequence alignment