Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB656_RS07255 Genome accession   NZ_CP011786
Coordinates   1772656..1774521 (+) Length   621 a.a.
NCBI ID   WP_414630307.1    Uniprot ID   -
Organism   Bifidobacterium actinocoloniiforme DSM 22766     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1767656..1779521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB656_RS07230 (AB656_07240) - 1767677..1768492 (-) 816 WP_081924899.1 mechanosensitive ion channel family protein -
  AB656_RS07235 (AB656_07245) - 1768489..1769046 (-) 558 WP_051905376.1 GNAT family N-acetyltransferase -
  AB656_RS07240 (AB656_07250) - 1769236..1769904 (+) 669 WP_033504687.1 sugar O-acetyltransferase -
  AB656_RS07245 (AB656_07255) - 1770107..1770571 (+) 465 WP_052201426.1 MarR family winged helix-turn-helix transcriptional regulator -
  AB656_RS07250 (AB656_07260) rcrP 1770780..1772549 (+) 1770 WP_033504688.1 ABC transporter ATP-binding protein Regulator
  AB656_RS07255 (AB656_07265) rcrQ 1772656..1774521 (+) 1866 WP_414630307.1 ABC transporter ATP-binding protein Regulator
  AB656_RS07260 (AB656_07270) rpmB 1774669..1774863 (+) 195 WP_033504689.1 50S ribosomal protein L28 -
  AB656_RS07265 (AB656_07275) - 1774981..1777539 (+) 2559 WP_033504690.1 ATP-dependent DNA helicase RecG -
  AB656_RS07270 (AB656_07280) - 1777609..1778205 (+) 597 WP_033504691.1 RsmD family RNA methyltransferase -
  AB656_RS07275 (AB656_07285) trmD 1778413..1779294 (-) 882 WP_033504692.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -

Sequence

Protein


Download         Length: 621 a.a.        Molecular weight: 68370.77 Da        Isoelectric Point: 7.2345

>NTDB_id=148657 AB656_RS07255 WP_414630307.1 1772656..1774521(+) (rcrQ) [Bifidobacterium actinocoloniiforme DSM 22766]
MAARPSRGGHGQMRGRMEKPESFGQAMKQLGRFSKRYIPAVIVAFAFGAVGAACQIVGPDWLKRVTDAIAKGMPAIVHGR
PVMASIDLGYVERVCFVLVGLYVGYALLTYVQSWIMATLTQRTAQGLREAISKKINRLPLRYFDRVSYGDVLSRITNDVD
AIGQTLGQSLGSLVISITTFVGSLIMMFANDVIMTVVAIGSAVVGGILMMAIMGVSQKYFVRQQIALGDVNGHVEEKYSG
HVIVKAYSGERDSIEQFERYNQDLYESGWKSQFLSSLMMPLMNFVGNFGYVAVCVVGASLAMNGKISFGVIVAFMMYIRL
FTQPLSQFAQAFQNLQRTAAASERVFGFLDAPEMADESDKRALLGRSADGSPKPVRGQLDFEHVNFSYKPDHPIIKDFTA
QAQPGQKVALVGPTGAGKTTMVNLLMRFYELDSGDIRIDGVSTEDVPRWNVHDQFSMVLQDTWVFRGTVKENVIYSKQGV
TDEQVVSACQAVGLDRFIRTLPQGYDTVLTDDTSLSQGQRQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDAL
TVGRTSVVIAHRLSTIRDADLILVMDHGRIIERGTHEQLLKQGGFYADLYNSQFASTELLA

Nucleotide


Download         Length: 1866 bp        

>NTDB_id=148657 AB656_RS07255 WP_414630307.1 1772656..1774521(+) (rcrQ) [Bifidobacterium actinocoloniiforme DSM 22766]
ATGGCCGCCAGGCCGTCCAGGGGCGGCCACGGCCAGATGCGCGGTCGCATGGAGAAACCTGAGAGCTTCGGGCAGGCCAT
GAAGCAGTTGGGGCGCTTCTCCAAGCGATACATCCCAGCCGTGATTGTGGCTTTCGCTTTCGGCGCGGTGGGCGCGGCCT
GCCAGATCGTGGGCCCCGACTGGCTTAAGAGGGTGACCGATGCCATCGCTAAGGGCATGCCGGCCATCGTCCACGGGCGC
CCCGTCATGGCCTCGATCGACCTGGGCTATGTGGAGCGCGTCTGCTTCGTGCTCGTGGGCCTGTACGTGGGCTACGCCTT
GTTGACCTATGTGCAGTCCTGGATCATGGCCACGCTCACCCAGCGCACCGCCCAGGGCCTGCGCGAGGCCATCTCGAAGA
AGATCAACCGTCTGCCCCTCAGGTACTTCGACAGGGTCTCCTACGGAGACGTGCTCTCACGGATCACCAACGACGTGGAC
GCTATCGGCCAGACCCTGGGCCAGAGCCTGGGTTCCTTGGTGATCTCAATCACTACGTTCGTGGGCTCGTTGATCATGAT
GTTCGCCAACGACGTGATCATGACCGTGGTGGCGATTGGGTCGGCGGTCGTGGGCGGCATCCTGATGATGGCCATCATGG
GGGTCTCCCAGAAGTACTTCGTGCGCCAGCAGATCGCCCTGGGCGACGTGAACGGCCACGTGGAGGAGAAGTACTCGGGC
CACGTGATCGTCAAGGCGTACTCGGGCGAGCGGGATTCGATCGAGCAGTTCGAGCGGTACAACCAGGACCTGTACGAGTC
GGGCTGGAAGTCCCAGTTCCTCTCCTCGCTGATGATGCCGCTGATGAACTTCGTCGGCAACTTCGGCTACGTGGCCGTAT
GCGTGGTCGGCGCCTCACTCGCCATGAACGGCAAGATATCCTTCGGCGTGATCGTGGCCTTCATGATGTACATCCGCCTG
TTCACGCAGCCCCTGAGCCAGTTCGCGCAAGCCTTCCAGAACCTCCAGCGCACCGCGGCCGCATCCGAGCGCGTCTTCGG
CTTCCTGGACGCACCCGAGATGGCCGACGAGTCCGACAAGCGGGCCCTGCTGGGTCGGTCGGCGGATGGAAGCCCCAAGC
CGGTGCGCGGGCAATTGGACTTCGAGCACGTGAACTTCTCCTATAAGCCGGATCATCCGATCATCAAGGACTTCACCGCT
CAGGCCCAGCCAGGGCAGAAGGTGGCCCTGGTCGGGCCGACAGGCGCTGGCAAGACCACGATGGTGAACCTGTTGATGCG
CTTCTATGAGCTGGATTCCGGCGACATCCGCATCGACGGGGTCTCCACCGAGGATGTGCCCCGCTGGAACGTCCACGACC
AGTTCTCCATGGTCCTGCAGGACACCTGGGTCTTCCGCGGCACGGTCAAGGAGAACGTGATTTACTCCAAGCAGGGGGTC
ACCGACGAACAGGTGGTCTCCGCCTGCCAGGCCGTAGGGTTGGACCGTTTCATCCGCACCCTGCCCCAGGGCTACGACAC
GGTGCTGACCGACGACACCTCGCTCTCCCAAGGCCAGCGGCAGTTGCTGACCATCGCCCGGGCCATGGTCCAGGACGCGC
CGATTCTGATCCTTGACGAGGCCACATCCTCGGTGGATACCCGAACTGAGGAGTTGATCCAGAAGGCCATGGACGCGCTG
ACCGTGGGCCGGACCAGCGTGGTTATCGCCCACCGCCTGTCGACCATCCGCGACGCCGACCTGATTCTGGTAATGGACCA
CGGCCGAATCATCGAGCGGGGCACCCACGAGCAGCTGCTTAAGCAGGGCGGCTTCTACGCCGACCTCTATAACAGCCAGT
TCGCTTCAACCGAGCTCCTGGCCTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(41-325)

ABC transporter (ABC_tran)

(396-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.082

94.686

0.512

Multiple sequence alignment