Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB656_RS07250 Genome accession   NZ_CP011786
Coordinates   1770780..1772549 (+) Length   589 a.a.
NCBI ID   WP_033504688.1    Uniprot ID   A0A086Z267
Organism   Bifidobacterium actinocoloniiforme DSM 22766     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1765780..1777549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB656_RS07225 (AB656_07235) - 1766418..1767680 (+) 1263 WP_033504686.1 Fic family protein -
  AB656_RS07230 (AB656_07240) - 1767677..1768492 (-) 816 WP_081924899.1 mechanosensitive ion channel family protein -
  AB656_RS07235 (AB656_07245) - 1768489..1769046 (-) 558 WP_051905376.1 GNAT family N-acetyltransferase -
  AB656_RS07240 (AB656_07250) - 1769236..1769904 (+) 669 WP_033504687.1 sugar O-acetyltransferase -
  AB656_RS07245 (AB656_07255) - 1770107..1770571 (+) 465 WP_052201426.1 MarR family winged helix-turn-helix transcriptional regulator -
  AB656_RS07250 (AB656_07260) rcrP 1770780..1772549 (+) 1770 WP_033504688.1 ABC transporter ATP-binding protein Regulator
  AB656_RS07255 (AB656_07265) rcrQ 1772656..1774521 (+) 1866 WP_414630307.1 ABC transporter ATP-binding protein Regulator
  AB656_RS07260 (AB656_07270) rpmB 1774669..1774863 (+) 195 WP_033504689.1 50S ribosomal protein L28 -
  AB656_RS07265 (AB656_07275) - 1774981..1777539 (+) 2559 WP_033504690.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 64936.52 Da        Isoelectric Point: 8.8930

>NTDB_id=148656 AB656_RS07250 WP_033504688.1 1770780..1772549(+) (rcrP) [Bifidobacterium actinocoloniiforme DSM 22766]
MIRICRYLSKAELGQLVLVVGFIVAQVWLDLKLPDYMADITRQVETPGSQMSEIWKSGGKMLLVSLLSLVCAVLTSYFAV
RVASSFSQRLRSLEFAKVESFSTAEMGRFSTASLITRSTNDVTQVQMFITMGLMMLIKAPIMAVWAVCKIAGKGYEWTMA
TGISVVILLVVVGLLMVFVMPRFKRMQSLTDNINQVARENLTGLKVVRAYNAEDYQEDKFTRANDELTGTQLSTTRAMSI
MMPVMNTIMNGLMLAVYWIGAYLINAAGMMDRITLFGNMVVFSSYAVQVIMSFLLMSMVFVLWPRADVSAHRIMEVLDTR
PSIADGQQASGKPGERGQVTFRDVSFTYPGASAPILEHVDFSVGQGRTVAFIGSTGSGKSTLVNLVPRFADVSSGQVLVD
GVDVRDYQVKALRDKIGYVPQQSFMFRGTVESNVAYGDQADGVSEQEKLERVKQAVGVAQAEEFVSGMPDTYRSAISQGG
SNVSGGQKQRLSIARAVWRKPEILIFDDSFSALDFKTDRQVRDALKDQMKGATMMIVAQRIGTIMDADQILVLDQGRVVG
KGTHQELLKTCPVYQQIAKSQLTEKELAA

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=148656 AB656_RS07250 WP_033504688.1 1770780..1772549(+) (rcrP) [Bifidobacterium actinocoloniiforme DSM 22766]
ATGATACGAATCTGTCGATACCTGTCCAAGGCGGAGCTGGGCCAGCTGGTCCTGGTGGTCGGCTTCATCGTGGCCCAGGT
CTGGCTGGACCTGAAGCTGCCGGACTATATGGCCGACATCACCCGCCAAGTCGAGACTCCGGGAAGCCAGATGAGCGAGA
TTTGGAAGTCCGGAGGCAAGATGCTCCTGGTCTCGCTGCTCTCCCTGGTGTGCGCGGTATTGACCTCCTACTTCGCTGTG
CGCGTGGCCTCCTCCTTCTCCCAGCGCTTGCGCTCGCTGGAGTTCGCCAAGGTGGAGTCCTTCTCCACAGCCGAGATGGG
CCGTTTCTCCACCGCCTCGCTGATCACGCGCTCCACCAACGACGTGACCCAGGTGCAGATGTTCATCACCATGGGTCTGA
TGATGCTGATCAAGGCGCCGATCATGGCCGTGTGGGCGGTCTGCAAGATCGCGGGCAAGGGCTATGAGTGGACTATGGCC
ACCGGCATCTCCGTGGTCATCCTGCTGGTCGTCGTCGGGCTGCTGATGGTCTTCGTCATGCCTAGGTTCAAGCGGATGCA
GTCCCTGACCGACAACATCAACCAGGTGGCCCGCGAGAACCTGACCGGCCTGAAAGTCGTGCGCGCCTACAACGCGGAGG
ACTACCAAGAGGATAAGTTCACCCGGGCCAACGACGAGCTGACCGGCACCCAGCTTTCCACCACACGCGCCATGAGCATC
ATGATGCCGGTGATGAACACGATCATGAACGGGCTGATGCTGGCGGTCTACTGGATCGGCGCCTACCTGATCAACGCCGC
CGGAATGATGGACCGTATCACCCTGTTCGGCAACATGGTGGTCTTCTCCTCCTACGCGGTGCAGGTCATCATGTCCTTCC
TGCTGATGAGCATGGTCTTCGTCCTGTGGCCTAGGGCCGACGTCTCCGCCCACCGCATCATGGAGGTCCTGGACACCAGG
CCCTCGATCGCCGACGGCCAGCAGGCCTCCGGCAAGCCGGGCGAGCGCGGGCAGGTGACCTTCCGCGACGTGTCCTTCAC
CTATCCGGGAGCCTCGGCCCCCATCCTGGAGCACGTGGACTTCTCGGTGGGGCAGGGGCGGACCGTGGCCTTCATCGGCT
CCACCGGCTCAGGCAAATCCACCCTGGTTAACCTGGTGCCCCGCTTCGCCGACGTCTCCAGCGGGCAGGTCCTGGTCGAC
GGAGTGGATGTGCGCGACTACCAGGTCAAGGCCCTGCGCGACAAGATCGGCTACGTGCCCCAGCAGTCCTTCATGTTCCG
CGGCACCGTCGAGTCCAACGTGGCTTACGGCGACCAGGCCGACGGCGTGAGCGAGCAGGAGAAGCTGGAGCGGGTCAAGC
AGGCCGTGGGTGTGGCCCAGGCCGAGGAGTTCGTCTCGGGCATGCCCGACACCTACCGGTCGGCCATCTCGCAAGGGGGC
TCCAATGTCTCCGGCGGGCAGAAGCAGCGCCTCTCGATAGCCCGGGCCGTGTGGCGCAAGCCGGAGATCCTGATCTTCGA
CGACTCCTTCTCCGCTCTGGACTTCAAGACCGACCGCCAGGTGCGCGACGCCCTGAAGGACCAGATGAAGGGGGCCACGA
TGATGATCGTGGCCCAGCGCATCGGCACGATCATGGACGCCGACCAAATCCTGGTCCTGGACCAGGGCAGGGTGGTGGGC
AAGGGCACCCACCAGGAGCTCCTGAAGACCTGCCCGGTCTACCAGCAGATCGCCAAGAGCCAGCTGACCGAAAAGGAGCT
GGCCGCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-509)

ABC transporter transmembrane region (ABC_membrane)

(61-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A086Z267

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.25

100

0.513

Multiple sequence alignment