Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FORC16_RS11990 Genome accession   NZ_CP011775
Coordinates   2656199..2656717 (-) Length   172 a.a.
NCBI ID   WP_011079537.1    Uniprot ID   Q7MHS7
Organism   Vibrio vulnificus strain FORC_016     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2651199..2661717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC16_RS11965 (FORC16_2381) rimM 2651244..2651792 (-) 549 WP_011079542.1 ribosome maturation factor RimM -
  FORC16_RS11970 (FORC16_2382) rpsP 2651808..2652056 (-) 249 WP_011079541.1 30S ribosomal protein S16 -
  FORC16_RS11975 (FORC16_2383) ffh 2652359..2653735 (-) 1377 WP_060530778.1 signal recognition particle protein -
  FORC16_RS11980 (FORC16_2384) - 2653949..2654743 (+) 795 WP_011079539.1 inner membrane protein YpjD -
  FORC16_RS11985 (FORC16_2385) - 2654830..2656107 (+) 1278 WP_011079538.1 HlyC/CorC family transporter -
  FORC16_RS11990 (FORC16_2386) luxS 2656199..2656717 (-) 519 WP_011079537.1 S-ribosylhomocysteine lyase Regulator
  FORC16_RS11995 (FORC16_2387) - 2656768..2657373 (-) 606 WP_230826194.1 hypothetical protein -
  FORC16_RS12000 (FORC16_2388) gshA 2657411..2658976 (-) 1566 WP_060530774.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18899.69 Da        Isoelectric Point: 5.2384

>NTDB_id=148629 FORC16_RS11990 WP_011079537.1 2656199..2656717(-) (luxS) [Vibrio vulnificus strain FORC_016]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGAPSEQDVASAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAAGISVNKNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=148629 FORC16_RS11990 WP_011079537.1 2656199..2656717(-) (luxS) [Vibrio vulnificus strain FORC_016]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCCGCGGTGCGTGTGGCAAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACGTTAGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTTAATGGTGCATCGGTTGAGATCATCGATATCTCACCG
ATGGGTTGTCGTACCGGTTTCTACATGAGCTTAATTGGTGCGCCGAGTGAGCAAGACGTGGCATCTGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGTGGTACCGCGGCCATGC
ACTCGCTAGATGAAGCGAAGCAAATCGCGCAGAACATTCTGGCAGCAGGAATTTCGGTGAATAAAAACGATGAACTGGCA
TTGCCAGAAGCGATGTTGAAAGAGCTCAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment