Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   FORC16_RS04900 Genome accession   NZ_CP011775
Coordinates   1041889..1043289 (+) Length   466 a.a.
NCBI ID   WP_011149911.1    Uniprot ID   A0AAN1PPC9
Organism   Vibrio vulnificus strain FORC_016     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1036889..1048289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC16_RS04875 (FORC16_0936) rsxB 1037527..1038123 (-) 597 WP_011080896.1 electron transport complex subunit RsxB -
  FORC16_RS04880 (FORC16_0937) rsxA 1038125..1038703 (-) 579 WP_011080895.1 electron transport complex subunit RsxA -
  FORC16_RS04890 (FORC16_0938) - 1039301..1039486 (+) 186 WP_060532115.1 hypothetical protein -
  FORC16_RS04895 (FORC16_0939) uvrB 1039585..1041615 (+) 2031 WP_060532113.1 excinuclease ABC subunit UvrB -
  FORC16_RS04900 (FORC16_0940) luxO 1041889..1043289 (+) 1401 WP_011149911.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  FORC16_RS04905 (FORC16_0941) luxU 1043289..1043636 (+) 348 WP_011080891.1 quorum-sensing phosphorelay protein LuxU -
  FORC16_RS04910 (FORC16_0942) - 1043700..1044602 (-) 903 WP_060532111.1 YvcK family protein -
  FORC16_RS04915 (FORC16_0943) moaA 1044918..1045907 (+) 990 WP_060532977.1 GTP 3',8-cyclase MoaA -
  FORC16_RS04920 (FORC16_0944) moaB 1045988..1046500 (+) 513 WP_011080888.1 molybdenum cofactor biosynthesis protein B -
  FORC16_RS04925 (FORC16_0945) moaC 1046511..1046990 (+) 480 WP_011080887.1 cyclic pyranopterin monophosphate synthase MoaC -
  FORC16_RS04930 (FORC16_0946) moaD 1046987..1047232 (+) 246 WP_011080886.1 molybdopterin synthase sulfur carrier subunit -
  FORC16_RS04935 (FORC16_0947) moaE 1047234..1047689 (+) 456 WP_011080885.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52120.68 Da        Isoelectric Point: 6.2540

>NTDB_id=148616 FORC16_RS04900 WP_011149911.1 1041889..1043289(+) (luxO) [Vibrio vulnificus strain FORC_016]
MQQITTTKQRYLLMVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKASHP
DVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNDADSAGSQNYQGFIGSSQKMQQVYRTI
DSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRER
GEDVIEIAYSLLGYMSHEEGKNFVRFSQPVIDRFNEYEWPGNVRQLQNVLRNVVVLNNGKEITMEMLPPPLNQPFERKES
VQPDLSELISVRDICPLWLTEKLAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQAWNEKEEKQKA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=148616 FORC16_RS04900 WP_011149911.1 1041889..1043289(+) (luxO) [Vibrio vulnificus strain FORC_016]
ATGCAACAAATAACGACAACGAAACAGCGCTACTTGCTGATGGTAGAAGACACCGCTTCTGTCGCAGCCCTCTATCGCTC
CTATCTCATGCCATTGGGTATCGATATCAATATCGTGGGTACTGGGCGTGACGCGATAGACAGTTTAAAACATCGCATTC
CAGATCTTATTCTGCTGGATTTACGTCTACCGGACATGACGGGAATGGACGTATTGCATGCAGTGAAAGCAAGTCACCCT
GATGTTCCTATCATTTTCATGACCGCACACGGCTCGATCGATACTGCCGTTGAAGCAATGCGACATGGTTCTCAGGATTT
TCTTATCAAGCCATGCGAAGCGGATCGCTTGAGGGTCACGGTAAACAACGCTATCCGCAAAGCGAGCAAATTGAAGAATG
ATGCGGACAGTGCAGGCAGCCAAAATTATCAAGGCTTTATCGGCAGTAGCCAAAAAATGCAGCAGGTTTATCGCACCATT
GATTCCGCGGCGAGCAGTAAAGCAAGCATCTTTATCACAGGTGAAAGTGGTACAGGTAAAGAGGTGTGCGCAGAAGCCAT
TCATGCGGCCAGTCGACGTGGAGACAAGCCATTTATCGCGATTAACTGTGCTGCAATTCCCAAGGATTTGATTGAAAGCG
AGCTATTTGGTCATGTCAAAGGTGCGTTTACCGGCGCTGCGACCGATCGCCAAGGGGCGGCAGAGCTCGCTGATGGGGGC
ACACTGTTTCTGGATGAGCTGTGTGAAATGGACTTGGATCTGCAAACAAAATTGCTGCGTTTTATCCAAACGGGTACTTT
CCAAAAAGTAGGCTCTTCAAAAATGAAGAGTGTTGACGTGCGTTTTGTGTGCGCGACAAACCGAGACCCTTGGAAAGAGG
TACAAGAAGGGCGCTTTCGTGAAGATTTGTACTACCGACTTTATGTGATTCCACTGCACTTGCCACCACTTCGTGAACGT
GGAGAGGATGTCATCGAGATCGCTTACTCGTTACTGGGTTACATGTCACACGAGGAAGGGAAAAACTTTGTTCGTTTCTC
TCAACCTGTGATAGATAGATTTAACGAATATGAGTGGCCAGGCAATGTGCGTCAGTTACAAAATGTGCTGCGTAATGTCG
TGGTTCTTAACAACGGTAAAGAGATTACCATGGAGATGCTGCCGCCTCCTTTGAACCAGCCCTTTGAACGCAAAGAAAGT
GTGCAGCCTGATCTGAGTGAGTTGATTTCCGTCAGGGATATTTGTCCATTGTGGTTGACAGAGAAACTGGCGATTGAACA
AGCGATCAAAGCGTGTGATGGTAACATTCCGAGAGCTGCTGGCTATCTGGATGTCAGCCCGTCAACGATTTATCGCAAGT
TACAGGCGTGGAACGAAAAAGAAGAAAAACAGAAAGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(417-457)

Response regulator receiver domain (Response_reg)

(13-121)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

85.714

96.137

0.824

Multiple sequence alignment