Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | AYR68_RS14995 | Genome accession | NZ_CP014539 |
| Coordinates | 3168176..3168691 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477147.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain XH859 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3163176..3173691
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYR68_RS14975 (AYR68_14975) | - | 3163495..3164955 (+) | 1461 | WP_000004971.1 | amino acid permease | - |
| AYR68_RS14980 (AYR68_14980) | - | 3165232..3166437 (+) | 1206 | WP_000512707.1 | RtcB family protein | - |
| AYR68_RS19755 (AYR68_14985) | - | 3166456..3166599 (+) | 144 | WP_162138624.1 | hypothetical protein | - |
| AYR68_RS14990 (AYR68_14990) | omp38 | 3166724..3167794 (-) | 1071 | WP_000777882.1 | outer membrane protein Omp38 | - |
| AYR68_RS14995 (AYR68_14995) | fimT | 3168176..3168691 (+) | 516 | WP_000477147.1 | GspH/FimT family pseudopilin | Machinery gene |
| AYR68_RS15000 (AYR68_15000) | - | 3168800..3169975 (+) | 1176 | WP_000129968.1 | thiolase family protein | - |
| AYR68_RS15005 (AYR68_15005) | - | 3170102..3170545 (+) | 444 | WP_001176580.1 | VOC family protein | - |
| AYR68_RS15010 (AYR68_15010) | - | 3170588..3170941 (-) | 354 | WP_000457787.1 | DMT family transporter | - |
| AYR68_RS15015 (AYR68_15015) | - | 3171024..3171509 (-) | 486 | WP_000935249.1 | DUF934 domain-containing protein | - |
| AYR68_RS15020 (AYR68_15020) | - | 3171502..3173145 (-) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19587.81 Da Isoelectric Point: 8.4960
>NTDB_id=148401 AYR68_RS14995 WP_000477147.1 3168176..3168691(+) (fimT) [Acinetobacter baumannii strain XH859]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=148401 AYR68_RS14995 WP_000477147.1 3168176..3168691(+) (fimT) [Acinetobacter baumannii strain XH859]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.373 |
97.076 |
0.421 |