Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | AZE33_RS09295 | Genome accession | NZ_CP014528 |
| Coordinates | 1943164..1943544 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | A0ABX6CGB7 |
| Organism | Acinetobacter baumannii strain XH858 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1938164..1948544
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AZE33_RS09265 (AZE33_09265) | kdsB | 1939067..1939828 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| AZE33_RS09270 (AZE33_09270) | - | 1939840..1940820 (+) | 981 | WP_038346636.1 | DNA polymerase III subunit delta' | - |
| AZE33_RS09275 (AZE33_09275) | - | 1940832..1941173 (+) | 342 | WP_020753088.1 | PilZ domain-containing protein | - |
| AZE33_RS09280 (AZE33_09280) | - | 1941191..1941964 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| AZE33_RS09285 (AZE33_09285) | - | 1942002..1942610 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| AZE33_RS09290 (AZE33_09290) | - | 1942620..1943174 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| AZE33_RS09295 (AZE33_09295) | xcpV | 1943164..1943544 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| AZE33_RS09300 (AZE33_09300) | xcpW | 1943544..1944245 (+) | 702 | WP_020753089.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| AZE33_RS09305 (AZE33_09305) | gspK | 1944245..1945204 (+) | 960 | WP_001218621.1 | type II secretion system minor pseudopilin GspK | - |
| AZE33_RS09310 (AZE33_09310) | - | 1945434..1946030 (+) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| AZE33_RS09315 (AZE33_09315) | ung | 1946081..1946794 (+) | 714 | WP_001177527.1 | uracil-DNA glycosylase | - |
| AZE33_RS09320 (AZE33_09320) | - | 1946791..1947915 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| AZE33_RS09325 (AZE33_09325) | tadA | 1947922..1948425 (+) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=148232 AZE33_RS09295 WP_000836911.1 1943164..1943544(+) (xcpV) [Acinetobacter baumannii strain XH858]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=148232 AZE33_RS09295 WP_000836911.1 1943164..1943544(+) (xcpV) [Acinetobacter baumannii strain XH858]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |