Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   AZE33_RS01400 Genome accession   NZ_CP014528
Coordinates   305071..305397 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   A0A151YUA4
Organism   Acinetobacter baumannii strain XH858     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 300071..310397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZE33_RS01375 (AZE33_01375) - 300520..301287 (+) 768 WP_000897416.1 uroporphyrinogen-III synthase -
  AZE33_RS01380 (AZE33_01380) - 301296..302135 (+) 840 WP_001230210.1 hypothetical protein -
  AZE33_RS01385 (AZE33_01385) - 302145..303338 (+) 1194 WP_000681780.1 membrane protein -
  AZE33_RS01390 (AZE33_01390) - 303346..303786 (+) 441 WP_000661569.1 acyl-CoA thioesterase -
  AZE33_RS01395 (AZE33_01395) - 303886..304911 (-) 1026 WP_079265503.1 IS30-like element ISAba125 family transposase -
  AZE33_RS01400 (AZE33_01400) hns 305071..305397 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  AZE33_RS01405 (AZE33_01405) gspN 305729..306472 (+) 744 WP_020752739.1 type II secretion system protein N -
  AZE33_RS01410 (AZE33_01410) - 306472..307308 (+) 837 WP_020752740.1 type II secretion system protein N -
  AZE33_RS01415 (AZE33_01415) gspD 307350..309626 (+) 2277 WP_001196426.1 type II secretion system secretin GspD -
  AZE33_RS01420 (AZE33_01420) - 309667..310296 (+) 630 WP_000219964.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=148206 AZE33_RS01400 WP_000801427.1 305071..305397(+) (hns) [Acinetobacter baumannii strain XH858]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=148206 AZE33_RS01400 WP_000801427.1 305071..305397(+) (hns) [Acinetobacter baumannii strain XH858]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGCCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterProScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A151YUA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment