Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AVR76_RS24425 Genome accession   NZ_CP014522
Coordinates   4899079..4899552 (+) Length   157 a.a.
NCBI ID   WP_001531261.1    Uniprot ID   -
Organism   Escherichia coli strain ZH063     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4894079..4904552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVR76_RS24400 (AVR76_24405) - 4894493..4895278 (+) 786 WP_001531254.1 hypothetical protein -
  AVR76_RS24405 (AVR76_24410) - 4895499..4895717 (-) 219 WP_001531256.1 AlpA family phage regulatory protein -
  AVR76_RS24410 (AVR76_24415) - 4895835..4896449 (-) 615 WP_001531257.1 inovirus Gp2 family protein -
  AVR76_RS24415 (AVR76_24420) - 4897042..4897995 (+) 954 WP_001531259.1 hypothetical protein -
  AVR76_RS24420 (AVR76_24425) - 4898231..4899049 (+) 819 WP_001531260.1 DUF932 domain-containing protein -
  AVR76_RS24425 (AVR76_24430) radC 4899079..4899552 (+) 474 WP_001531261.1 DNA repair protein RadC Machinery gene
  AVR76_RS24430 (AVR76_24435) - 4899552..4899887 (+) 336 WP_032143152.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AVR76_RS24435 (AVR76_24440) - 4899918..4900253 (+) 336 WP_001531265.1 TA system toxin CbtA family protein -
  AVR76_RS24440 (AVR76_24445) - 4900384..4901217 (+) 834 WP_001531266.1 DUF4942 domain-containing protein -
  AVR76_RS24445 (AVR76_24450) - 4901294..4901542 (+) 249 WP_024187601.1 ribbon-helix-helix domain-containing protein -
  AVR76_RS24450 (AVR76_24455) - 4901546..4901821 (+) 276 WP_001531268.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AVR76_RS24455 (AVR76_24460) - 4901935..4902732 (+) 798 WP_001531269.1 helix-turn-helix transcriptional regulator -
  AVR76_RS28515 - 4903143..4903314 (+) 172 Protein_4699 integrase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17936.72 Da        Isoelectric Point: 8.6704

>NTDB_id=148196 AVR76_RS24425 WP_001531261.1 4899079..4899552(+) (radC) [Escherichia coli strain ZH063]
MSELMLTPVFSVSEQRVIRRAMRLLEKYQRNPGESFLSSDATKTWLQLHLARQEREMFVVLYLDNQNRLLEHETLFLGTI
NSTEVHPREIVKSALRHNAAAVILAHNHPSGVAEPSRADRLITTNIVKTLDLVKVRVLDHFIIGAGDILSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=148196 AVR76_RS24425 WP_001531261.1 4899079..4899552(+) (radC) [Escherichia coli strain ZH063]
ATGTCTGAACTGATGCTAACACCGGTATTTTCGGTGAGTGAACAACGCGTTATCCGCCGTGCGATGCGCCTGCTGGAGAA
ATATCAACGCAATCCTGGCGAATCTTTTCTTTCCTCTGACGCCACAAAAACCTGGCTGCAACTGCATCTGGCACGACAGG
AGCGGGAAATGTTTGTTGTGCTCTACCTCGATAACCAGAACCGACTGCTGGAACACGAAACGCTATTTCTCGGCACGATT
AACAGCACAGAAGTACATCCCCGTGAGATTGTGAAATCTGCGCTACGGCACAATGCCGCAGCAGTGATCCTTGCGCATAA
CCATCCCTCCGGCGTGGCGGAACCCAGTCGGGCCGACAGACTTATTACAACGAATATTGTTAAGACACTGGATTTGGTGA
AAGTGAGGGTGCTGGATCATTTCATTATTGGGGCGGGGGATATCCTCTCTTTTGCCGAACGGGGCTGGCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.085

75.159

0.414