Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AVR76_RS20885 Genome accession   NZ_CP014522
Coordinates   4159273..4159749 (+) Length   158 a.a.
NCBI ID   WP_001618155.1    Uniprot ID   -
Organism   Escherichia coli strain ZH063     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4154273..4164749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVR76_RS20865 (AVR76_20870) - 4154625..4157471 (+) 2847 WP_059319954.1 Ag43/Cah family autotransporter adhesin -
  AVR76_RS20870 (AVR76_20875) - 4157542..4157775 (+) 234 WP_001117568.1 DUF905 family protein -
  AVR76_RS20875 (AVR76_20880) - 4157866..4158684 (+) 819 WP_001234753.1 DUF932 domain-containing protein -
  AVR76_RS20880 (AVR76_20885) - 4158776..4159261 (+) 486 WP_000214415.1 antirestriction protein -
  AVR76_RS20885 (AVR76_20890) radC 4159273..4159749 (+) 477 WP_001618155.1 RadC family protein Machinery gene
  AVR76_RS20890 (AVR76_20895) - 4159818..4160039 (+) 222 WP_000692346.1 DUF987 domain-containing protein -
  AVR76_RS20895 (AVR76_20900) - 4160113..4160481 (+) 369 WP_024175935.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AVR76_RS20900 (AVR76_20905) - 4160571..4160948 (+) 378 WP_001094448.1 TA system toxin CbtA family protein -
  AVR76_RS20905 (AVR76_20910) - 4160945..4161433 (+) 489 WP_000761714.1 DUF5983 family protein -
  AVR76_RS20910 (AVR76_20915) - 4161445..4161637 (+) 193 Protein_4036 hypothetical protein -
  AVR76_RS20915 (AVR76_20920) - 4161722..4162567 (+) 846 WP_001576423.1 DUF4942 domain-containing protein -
  AVR76_RS20925 (AVR76_20930) - 4163160..4163657 (+) 498 WP_000509815.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17645.31 Da        Isoelectric Point: 7.6151

>NTDB_id=148173 AVR76_RS20885 WP_001618155.1 4159273..4159749(+) (radC) [Escherichia coli strain ZH063]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALVLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=148173 AVR76_RS20885 WP_001618155.1 4159273..4159749(+) (radC) [Escherichia coli strain ZH063]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTTATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTACTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGTCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCTTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399