Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AVR76_RS20475 Genome accession   NZ_CP014522
Coordinates   4069889..4070557 (-) Length   222 a.a.
NCBI ID   WP_061363759.1    Uniprot ID   -
Organism   Escherichia coli strain ZH063     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4064889..4075557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVR76_RS20445 (AVR76_20455) rfaQ 4065066..4066124 (-) 1059 WP_000360408.1 lipopolysaccharide core heptosyltransferase RfaQ -
  AVR76_RS20450 (AVR76_20460) waaA 4066538..4067815 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  AVR76_RS20455 (AVR76_20465) coaD 4067823..4068302 (+) 480 WP_001171854.1 pantetheine-phosphate adenylyltransferase -
  AVR76_RS20460 (AVR76_20470) mutM 4068341..4069150 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  AVR76_RS20465 (AVR76_20475) rpmG 4069248..4069415 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  AVR76_RS20470 (AVR76_20480) rpmB 4069436..4069672 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  AVR76_RS20475 (AVR76_20485) radC 4069889..4070557 (-) 669 WP_061363759.1 DNA repair protein RadC Machinery gene
  AVR76_RS20480 (AVR76_20490) coaBC 4070729..4071949 (+) 1221 WP_000050112.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AVR76_RS20485 (AVR76_20495) dut 4071927..4072385 (+) 459 WP_000976070.1 dUTP diphosphatase -
  AVR76_RS20490 (AVR76_20500) slmA 4072492..4073088 (+) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  AVR76_RS20495 (AVR76_20505) pyrE 4073125..4073766 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  AVR76_RS20500 (AVR76_20510) rph 4073832..4074548 (-) 717 WP_001247093.1 ribonuclease PH -
  AVR76_RS20505 (AVR76_20515) yicC 4074675..4075538 (+) 864 WP_000621332.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=148171 AVR76_RS20475 WP_061363759.1 4069889..4070557(-) (radC) [Escherichia coli strain ZH063]
MKNNVQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGTAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=148171 AVR76_RS20475 WP_061363759.1 4069889..4070557(-) (radC) [Escherichia coli strain ZH063]
GTGAAAAACAATGTACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGACTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(10-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.099

100

0.491