Detailed information NTG0148149

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AVR76_RS15165
• Genome accession: NZ_CP014522
• Coordinates: 2983722..2984714 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ZH063
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2978722..2989714

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVR76_RS15145 (AVR76_15140)	ygbM	2979360..2980136 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
AVR76_RS15150 (AVR76_15145)	ygbN	2980225..2981589 (+)	1365	WP_000104433.1	GntP family transporter	-
AVR76_RS15155 (AVR76_15150)	-	2981732..2982775 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
AVR76_RS15160 (AVR76_15155)	-	2983000..2983551 (+)	552	WP_001179444.1	flavodoxin family protein	-
AVR76_RS15165 (AVR76_15160)	rpoS	2983722..2984714 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AVR76_RS15170 (AVR76_15165)	nlpD	2984777..2985871 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
AVR76_RS15175 (AVR76_15170)	pcm	2986056..2986682 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AVR76_RS15180 (AVR76_15175)	surE	2986676..2987437 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AVR76_RS15185 (AVR76_15180)	truD	2987418..2988467 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
AVR76_RS15190 (AVR76_15185)	ispF	2988464..2988943 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AVR76_RS15195 (AVR76_15190)	ispD	2988943..2989653 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=148149 AVR76_RS15165 WP_000081550.1 2983722..2984714(-) (rpoS) [Escherichia coli strain ZH063]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=148149 AVR76_RS15165 WP_000081550.1 2983722..2984714(-) (rpoS) [Escherichia coli strain ZH063]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715