Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AVR76_RS14865 Genome accession   NZ_CP014522
Coordinates   2931592..2932107 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain ZH063     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2926592..2937107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVR76_RS14845 (AVR76_14840) emrA 2926740..2927912 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AVR76_RS14850 (AVR76_14845) emrB 2927929..2929467 (+) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  AVR76_RS14855 (AVR76_14850) - 2929725..2930432 (+) 708 WP_001097132.1 RNA ligase family protein -
  AVR76_RS14860 (AVR76_14855) - 2930429..2931541 (+) 1113 WP_000638136.1 ATP-binding protein -
  AVR76_RS14865 (AVR76_14860) luxS 2931592..2932107 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  AVR76_RS14870 (AVR76_14865) gshA 2932257..2933813 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AVR76_RS14875 (AVR76_14870) yqaA 2933886..2934314 (-) 429 WP_001287462.1 YqaA family protein -
  AVR76_RS14880 (AVR76_14875) yqaB 2934311..2934877 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AVR76_RS14910 (AVR76_14905) csrA 2936066..2936251 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=148146 AVR76_RS14865 WP_001130208.1 2931592..2932107(-) (luxS) [Escherichia coli strain ZH063]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=148146 AVR76_RS14865 WP_001130208.1 2931592..2932107(-) (luxS) [Escherichia coli strain ZH063]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737