Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AVR76_RS11405 Genome accession   NZ_CP014522
Coordinates   2210678..2211154 (+) Length   158 a.a.
NCBI ID   WP_001186200.1    Uniprot ID   -
Organism   Escherichia coli strain ZH063     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2205678..2216154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVR76_RS11375 (AVR76_11365) - 2206502..2207572 (+) 1071 WP_000102631.1 patatin-like phospholipase family protein -
  AVR76_RS11380 (AVR76_11370) - 2207708..2208385 (+) 678 WP_001362823.1 hypothetical protein -
  AVR76_RS11385 (AVR76_11375) - 2208401..2208811 (+) 411 WP_000846703.1 hypothetical protein -
  AVR76_RS11390 (AVR76_11380) - 2209032..2209850 (+) 819 WP_001542275.1 DUF932 domain-containing protein -
  AVR76_RS11395 (AVR76_11385) - 2209850..2210095 (+) 246 WP_001164966.1 hypothetical protein -
  AVR76_RS11400 (AVR76_11390) - 2210189..2210662 (+) 474 WP_001542276.1 antirestriction protein -
  AVR76_RS11405 (AVR76_11395) radC 2210678..2211154 (+) 477 WP_001186200.1 RadC family protein Machinery gene
  AVR76_RS11410 (AVR76_11400) yeeT 2211217..2211438 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  AVR76_RS11415 (AVR76_11405) - 2211457..2212101 (+) 645 WP_000086752.1 hypothetical protein -
  AVR76_RS11420 (AVR76_11410) cbeA 2212117..2212485 (+) 369 WP_001280918.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AVR76_RS11425 (AVR76_11415) cbtA 2212574..2212948 (+) 375 WP_000854815.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  AVR76_RS11430 (AVR76_11420) yeeW 2212945..2213139 (+) 195 WP_000988600.1 DUF5983 family protein -
  AVR76_RS28875 (AVR76_11425) - 2213185..2213265 (+) 81 Protein_2217 hypothetical protein -
  AVR76_RS28880 - 2213554..2213700 (-) 147 Protein_2218 transposase domain-containing protein -
  AVR76_RS28885 (AVR76_11430) - 2213754..2213936 (+) 183 WP_001296208.1 EutP/PduV family microcompartment system protein -
  AVR76_RS11445 (AVR76_11435) tmaR 2214037..2214366 (-) 330 WP_000450409.1 DUF496 family protein -
  AVR76_RS11450 (AVR76_11440) yeeA 2214538..2215596 (-) 1059 WP_001200889.1 FUSC family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17764.39 Da        Isoelectric Point: 7.6152

>NTDB_id=148135 AVR76_RS11405 WP_001186200.1 2210678..2211154(+) (radC) [Escherichia coli strain ZH063]
MQQISFLPGEMTTRERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=148135 AVR76_RS11405 WP_001186200.1 2210678..2211154(+) (radC) [Escherichia coli strain ZH063]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392