Detailed information NTG0148064

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AVR69_RS15250
• Genome accession: NZ_CP014497
• Coordinates: 3014368..3015360 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ZH193
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3009368..3020360

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVR69_RS15230 (AVR69_15220)	ygbM	3010006..3010782 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
AVR69_RS15235 (AVR69_15225)	ygbN	3010871..3012235 (+)	1365	WP_000104433.1	GntP family transporter	-
AVR69_RS15240 (AVR69_15230)	-	3012378..3013421 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
AVR69_RS15245 (AVR69_15235)	-	3013646..3014197 (+)	552	WP_001179444.1	flavodoxin family protein	-
AVR69_RS15250 (AVR69_15240)	rpoS	3014368..3015360 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AVR69_RS15255 (AVR69_15245)	nlpD	3015423..3016517 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
AVR69_RS15260 (AVR69_15250)	pcm	3016702..3017328 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AVR69_RS15265 (AVR69_15255)	surE	3017322..3018083 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AVR69_RS15270 (AVR69_15260)	truD	3018064..3019113 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
AVR69_RS15275 (AVR69_15265)	ispF	3019110..3019589 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AVR69_RS15280 (AVR69_15270)	ispD	3019589..3020299 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=148064 AVR69_RS15250 WP_000081550.1 3014368..3015360(-) (rpoS) [Escherichia coli strain ZH193]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=148064 AVR69_RS15250 WP_000081550.1 3014368..3015360(-) (rpoS) [Escherichia coli strain ZH193]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715