Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AVR72_RS23705 Genome accession   NZ_CP014495
Coordinates   4740086..4740562 (-) Length   158 a.a.
NCBI ID   WP_001186788.1    Uniprot ID   -
Organism   Escherichia coli strain SaT040     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4735086..4745562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVR72_RS29595 - 4735929..4736088 (-) 160 Protein_4538 integrase -
  AVR72_RS23665 (AVR72_23660) - 4736552..4736878 (-) 327 WP_000779482.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AVR72_RS23670 (AVR72_23665) - 4736875..4737138 (-) 264 WP_001143297.1 type II toxin-antitoxin system ParD family antitoxin -
  AVR72_RS23675 (AVR72_23670) - 4737210..4738076 (-) 867 WP_001290180.1 DUF4942 domain-containing protein -
  AVR72_RS23680 (AVR72_23675) - 4738169..4738366 (-) 198 WP_000839238.1 DUF957 domain-containing protein -
  AVR72_RS23685 (AVR72_23680) - 4738378..4738866 (-) 489 WP_021535504.1 DUF5983 family protein -
  AVR72_RS23690 (AVR72_23685) - 4738863..4739240 (-) 378 WP_000854720.1 TA system toxin CbtA family protein -
  AVR72_RS23695 (AVR72_23690) - 4739330..4739698 (-) 369 WP_001539669.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AVR72_RS23700 (AVR72_23695) - 4739778..4739999 (-) 222 WP_000692349.1 DUF987 domain-containing protein -
  AVR72_RS23705 (AVR72_23700) radC 4740086..4740562 (-) 477 WP_001186788.1 RadC family protein Machinery gene
  AVR72_RS23710 (AVR72_23705) - 4740578..4741063 (-) 486 WP_000849596.1 antirestriction protein -
  AVR72_RS23715 (AVR72_23710) - 4741118..4741936 (-) 819 WP_001234642.1 DUF932 domain-containing protein -
  AVR72_RS23720 (AVR72_23715) - 4742036..4742269 (-) 234 WP_001119719.1 DUF905 family protein -
  AVR72_RS23725 (AVR72_23720) - 4742355..4742759 (+) 405 WP_001539664.1 transposase -
  AVR72_RS23730 (AVR72_23725) tnpB 4742756..4743103 (+) 348 WP_000612617.1 IS66 family insertion sequence element accessory protein TnpB -
  AVR72_RS23735 (AVR72_23730) - 4743152..4744690 (+) 1539 WP_061186101.1 IS66-like element ISEc22 family transposase -
  AVR72_RS23740 (AVR72_23735) - 4744810..4745265 (-) 456 WP_000581493.1 IrmA family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17641.24 Da        Isoelectric Point: 7.2517

>NTDB_id=148023 AVR72_RS23705 WP_001186788.1 4740086..4740562(-) (radC) [Escherichia coli strain SaT040]
MQQLSFLPGNMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=148023 AVR72_RS23705 WP_001186788.1 4740086..4740562(-) (radC) [Escherichia coli strain SaT040]
ATGCAGCAGCTTTCCTTTCTGCCCGGAAACATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment