Detailed information NTG0148013

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AVR72_RS22420
• Genome accession: NZ_CP014495
• Coordinates: 4453888..4454913 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain SaT040
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4448888..4459913

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVR72_RS22390 (AVR72_22385)	zapB	4448972..4449217 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
AVR72_RS22395 (AVR72_22390)	rraA	4449302..4449787 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AVR72_RS22400 (AVR72_22395)	menA	4449880..4450806 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AVR72_RS22405 (AVR72_22400)	hslU	4450873..4452204 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
AVR72_RS22410 (AVR72_22405)	hslV	4452214..4452744 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AVR72_RS22415 (AVR72_22410)	ftsN	4452837..4453796 (-)	960	WP_000068834.1	cell division protein FtsN	-
AVR72_RS22420 (AVR72_22415)	cytR	4453888..4454913 (-)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
AVR72_RS22425 (AVR72_22420)	priA	4455069..4457267 (-)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
AVR72_RS22430 (AVR72_22425)	rpmE	4457470..4457682 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
AVR72_RS22435 (AVR72_22430)	yiiX	4457743..4458351 (-)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
AVR72_RS22440 (AVR72_22435)	metJ	4458411..4458728 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=148013 AVR72_RS22420 WP_000644908.1 4453888..4454913(-) (cytR) [Escherichia coli strain SaT040]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=148013 AVR72_RS22420 WP_000644908.1 4453888..4454913(-) (cytR) [Escherichia coli strain SaT040]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625