Detailed information NTG0147977

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AVR72_RS15450
• Genome accession: NZ_CP014495
• Coordinates: 3038591..3039583 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SaT040
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3033591..3044583

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVR72_RS15430 (AVR72_15425)	ygbM	3034229..3035005 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
AVR72_RS15435 (AVR72_15430)	ygbN	3035094..3036458 (+)	1365	WP_000104433.1	GntP family transporter	-
AVR72_RS15440 (AVR72_15435)	-	3036601..3037644 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
AVR72_RS15445 (AVR72_15440)	-	3037869..3038420 (+)	552	WP_001179444.1	flavodoxin family protein	-
AVR72_RS15450 (AVR72_15445)	rpoS	3038591..3039583 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AVR72_RS15455 (AVR72_15450)	nlpD	3039646..3040740 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
AVR72_RS15460 (AVR72_15455)	pcm	3040925..3041551 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AVR72_RS15465 (AVR72_15460)	surE	3041545..3042306 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AVR72_RS15470 (AVR72_15465)	truD	3042287..3043336 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
AVR72_RS15475 (AVR72_15470)	ispF	3043333..3043812 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AVR72_RS15480 (AVR72_15475)	ispD	3043812..3044522 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=147977 AVR72_RS15450 WP_000081550.1 3038591..3039583(-) (rpoS) [Escherichia coli strain SaT040]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=147977 AVR72_RS15450 WP_000081550.1 3038591..3039583(-) (rpoS) [Escherichia coli strain SaT040]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715