Detailed information NTG0147890

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AVR74_RS14745
• Genome accession: NZ_CP014488
• Coordinates: 2931558..2932550 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain G749
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2926558..2937550

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVR74_RS14725 (AVR74_14725)	ygbM	2927196..2927972 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
AVR74_RS14730 (AVR74_14730)	ygbN	2928061..2929425 (+)	1365	WP_000104433.1	GntP family transporter	-
AVR74_RS14735 (AVR74_14735)	-	2929568..2930611 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
AVR74_RS14740 (AVR74_14740)	-	2930836..2931387 (+)	552	WP_001179444.1	flavodoxin family protein	-
AVR74_RS14745 (AVR74_14745)	rpoS	2931558..2932550 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AVR74_RS14750 (AVR74_14750)	nlpD	2932613..2933707 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
AVR74_RS14755 (AVR74_14755)	pcm	2933892..2934518 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AVR74_RS14760 (AVR74_14760)	surE	2934512..2935273 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AVR74_RS14765 (AVR74_14765)	truD	2935254..2936303 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
AVR74_RS14770 (AVR74_14770)	ispF	2936300..2936779 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AVR74_RS14775 (AVR74_14775)	ispD	2936779..2937489 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=147890 AVR74_RS14745 WP_000081550.1 2931558..2932550(-) (rpoS) [Escherichia coli strain G749]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=147890 AVR74_RS14745 WP_000081550.1 2931558..2932550(-) (rpoS) [Escherichia coli strain G749]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715