Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AVR74_RS10555 Genome accession   NZ_CP014488
Coordinates   2085391..2086818 (+) Length   475 a.a.
NCBI ID   WP_000980551.1    Uniprot ID   -
Organism   Escherichia coli strain G749     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2080391..2091818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVR74_RS10515 (AVR74_10515) yeeW 2080575..2080769 (+) 195 WP_000988601.1 DUF5983 family protein -
  AVR74_RS28640 (AVR74_10520) - 2080815..2080895 (+) 81 Protein_2027 hypothetical protein -
  AVR74_RS10525 (AVR74_10525) - 2081184..2081330 (-) 147 Protein_2028 transposase domain-containing protein -
  AVR74_RS10530 (AVR74_10530) - 2081384..2081566 (+) 183 WP_061157913.1 EutP/PduV family microcompartment system protein -
  AVR74_RS10535 (AVR74_10535) tmaR 2081667..2081996 (-) 330 WP_000450409.1 DUF496 family protein -
  AVR74_RS10540 (AVR74_10540) yeeA 2082168..2083226 (-) 1059 WP_001200890.1 FUSC family protein -
  AVR74_RS10545 (AVR74_10545) sbmC 2083424..2083897 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  AVR74_RS10550 (AVR74_10550) dacD 2084016..2085182 (-) 1167 WP_061157914.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AVR74_RS10555 (AVR74_10555) sbcB 2085391..2086818 (+) 1428 WP_000980551.1 exodeoxyribonuclease I Machinery gene
  AVR74_RS10560 (AVR74_10560) plaP 2086892..2088250 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  AVR74_RS28645 yoeI 2088240..2088302 (-) 63 WP_010723108.1 membrane protein YoeI -
  AVR74_RS10565 (AVR74_10565) yeeY 2088517..2089446 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  AVR74_RS10570 (AVR74_10570) yeeZ 2089492..2090316 (-) 825 WP_000754737.1 SDR family oxidoreductase -
  AVR74_RS10575 (AVR74_10575) yoeB 2090399..2090653 (-) 255 WP_024705227.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  AVR74_RS10580 (AVR74_10580) yefM 2090650..2090901 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  AVR74_RS26795 hisL 2091184..2091234 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54513.77 Da        Isoelectric Point: 5.3476

>NTDB_id=147877 AVR74_RS10555 WP_000980551.1 2085391..2086818(+) (sbcB) [Escherichia coli strain G749]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDD
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=147877 AVR74_RS10555 WP_000980551.1 2085391..2086818(+) (sbcB) [Escherichia coli strain G749]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGAT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATAAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCTGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-191)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581