Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   AWV81_RS21185 Genome accession   NZ_CP014471
Coordinates   3971070..3971759 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis subsp. natto strain CGMCC 2108     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3966070..3976759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWV81_RS21165 (AWV81_21155) yxeA 3966999..3967346 (-) 348 WP_003227084.1 YxeA family protein -
  AWV81_RS21170 (AWV81_21160) yxdM 3967360..3969244 (-) 1885 Protein_4122 ABC transporter permease YxdM -
  AWV81_RS21175 (AWV81_21165) tpeL 3969219..3969952 (-) 734 Protein_4123 ABC transporter ATP-binding protein -
  AWV81_RS21180 (AWV81_21170) yxdK 3970096..3971073 (-) 978 WP_014481410.1 two-component system sensor histidine kinase YxdK -
  AWV81_RS21185 (AWV81_21175) braR 3971070..3971759 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  AWV81_RS21190 (AWV81_21180) iolJ 3971867..3972739 (-) 873 WP_014481411.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  AWV81_RS21195 (AWV81_21185) iolI 3972760..3973596 (-) 837 WP_014481412.1 2-keto-myo-inositol isomerase -
  AWV81_RS21200 (AWV81_21190) iolH 3973682..3974551 (-) 870 WP_014481413.1 sugar phosphate isomerase/epimerase -
  AWV81_RS21205 (AWV81_21195) iolG 3974571..3975605 (-) 1035 WP_014481414.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=147845 AWV81_RS21185 WP_003243527.1 3971070..3971759(-) (braR) [Bacillus subtilis subsp. natto strain CGMCC 2108]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=147845 AWV81_RS21185 WP_003243527.1 3971070..3971759(-) (braR) [Bacillus subtilis subsp. natto strain CGMCC 2108]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATACCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment