Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   AWV81_RS00335 Genome accession   NZ_CP014471
Coordinates   59992..60222 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis subsp. natto strain CGMCC 2108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54992..65222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWV81_RS00300 (AWV81_00300) ridA 55156..55533 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  AWV81_RS00305 (AWV81_00305) spoVG 55728..56021 (+) 294 WP_003218346.1 septation regulator SpoVG -
  AWV81_RS00315 (AWV81_00315) glmU 56214..57584 (+) 1371 WP_014478599.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  AWV81_RS00320 (AWV81_00320) prsS 57607..58560 (+) 954 WP_014478600.1 ribose-phosphate diphosphokinase -
  AWV81_RS00325 (AWV81_00325) rplYB 58645..59259 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  AWV81_RS00330 (AWV81_00330) pth 59366..59932 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  AWV81_RS00335 (AWV81_00335) subA/fin 59992..60222 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  AWV81_RS00340 (AWV81_00340) mfd 60292..63825 (+) 3534 WP_014478601.1 transcription-repair coupling factor -
  AWV81_RS00345 (AWV81_00345) spoVT 63961..64497 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=147707 AWV81_RS00335 WP_003243417.1 59992..60222(+) (subA/fin) [Bacillus subtilis subsp. natto strain CGMCC 2108]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=147707 AWV81_RS00335 WP_003243417.1 59992..60222(+) (subA/fin) [Bacillus subtilis subsp. natto strain CGMCC 2108]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1