Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   ABH13_RS17850 Genome accession   NZ_CP011686
Coordinates   3656854..3656973 (+) Length   39 a.a.
NCBI ID   WP_007407639.1    Uniprot ID   A3KLD5
Organism   Bacillus velezensis strain G341     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3651854..3661973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH13_RS17830 (ABH13_3620) - 3652204..3652716 (+) 513 Protein_3510 bacteriocin biosynthesis protein AlbG -
  ABH13_RS17835 (ABH13_3621) - 3652723..3654099 (-) 1377 WP_042635568.1 YncE family protein -
  ABH13_RS17840 (ABH13_3622) - 3654139..3655494 (-) 1356 WP_047936274.1 YncE family protein -
  ABH13_RS17845 (ABH13_3623) rapF 3655725..3656870 (+) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  ABH13_RS17850 (ABH13_3624) phrF 3656854..3656973 (+) 120 WP_007407639.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  ABH13_RS17855 - 3657171..3657371 (+) 201 Protein_3515 helix-turn-helix transcriptional regulator -
  ABH13_RS17860 - 3657387..3657590 (+) 204 WP_007407641.1 hypothetical protein -
  ABH13_RS17865 (ABH13_3626) - 3657625..3657801 (+) 177 Protein_3517 DUF4177 domain-containing protein -
  ABH13_RS17870 (ABH13_3627) - 3657995..3658276 (+) 282 WP_007407643.1 hypothetical protein -
  ABH13_RS17875 (ABH13_3628) - 3658320..3658832 (+) 513 WP_007407644.1 stage II sporulation protein M -
  ABH13_RS17885 (ABH13_3630) - 3659423..3659641 (-) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  ABH13_RS17890 (ABH13_3631) speB 3659809..3660681 (-) 873 WP_007614448.1 agmatinase -
  ABH13_RS17895 (ABH13_3632) speE 3660740..3661570 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4295.19 Da        Isoelectric Point: 10.0233

>NTDB_id=147488 ABH13_RS17850 WP_007407639.1 3656854..3656973(+) (phrF) [Bacillus velezensis strain G341]
MKLKYKLALTCLAISTVFVSAEIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=147488 ABH13_RS17850 WP_007407639.1 3656854..3656973(+) (phrF) [Bacillus velezensis strain G341]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGAAATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment