Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ABH13_RS11900 Genome accession   NZ_CP011686
Coordinates   2504349..2505419 (-) Length   356 a.a.
NCBI ID   WP_012117985.1    Uniprot ID   A0A411A7V3
Organism   Bacillus velezensis strain G341     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2499349..2510419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH13_RS11850 (ABH13_2402) sipW 2499409..2499993 (-) 585 WP_015240205.1 signal peptidase I SipW -
  ABH13_RS11855 (ABH13_2403) tapA 2499965..2500636 (-) 672 WP_047935952.1 amyloid fiber anchoring/assembly protein TapA -
  ABH13_RS11860 (ABH13_2404) - 2500895..2501224 (+) 330 WP_047935954.1 DUF3889 domain-containing protein -
  ABH13_RS11865 (ABH13_2405) - 2501264..2501443 (-) 180 WP_003153093.1 YqzE family protein -
  ABH13_RS11870 (ABH13_2406) comGG 2501500..2501877 (-) 378 WP_032866434.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABH13_RS11875 (ABH13_2407) comGF 2501878..2502378 (-) 501 WP_257645080.1 competence type IV pilus minor pilin ComGF -
  ABH13_RS11880 (ABH13_2408) comGE 2502287..2502601 (-) 315 WP_007408323.1 competence type IV pilus minor pilin ComGE -
  ABH13_RS11885 (ABH13_2409) comGD 2502585..2503022 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABH13_RS11890 (ABH13_2410) comGC 2503012..2503320 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  ABH13_RS11895 (ABH13_2411) comGB 2503325..2504362 (-) 1038 WP_032866436.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABH13_RS11900 (ABH13_2412) comGA 2504349..2505419 (-) 1071 WP_012117985.1 competence type IV pilus ATPase ComGA Machinery gene
  ABH13_RS11905 (ABH13_2413) - 2505611..2506561 (-) 951 WP_015417820.1 magnesium transporter CorA family protein -
  ABH13_RS11910 (ABH13_2414) - 2506707..2508008 (+) 1302 WP_007408318.1 hemolysin family protein -
  ABH13_RS11915 (ABH13_2415) - 2508046..2508876 (-) 831 WP_007408317.1 STAS domain-containing protein -
  ABH13_RS11925 (ABH13_2416) - 2509083..2509463 (-) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ABH13_RS11930 (ABH13_2417) - 2509700..2509945 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40557.86 Da        Isoelectric Point: 9.4784

>NTDB_id=147461 ABH13_RS11900 WP_012117985.1 2504349..2505419(-) (comGA) [Bacillus velezensis strain G341]
MKNIETYSRNIINEAYTARASDIHIVPRERDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=147461 ABH13_RS11900 WP_012117985.1 2504349..2505419(-) (comGA) [Bacillus velezensis strain G341]
GTGAAAAATATAGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAGGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTAATTTCTCATTTTAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCCTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCGGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAAAGGCATTTCAACCGGCGTATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTCGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411A7V3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.303

100

0.823
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

37.892

98.596

0.374

Multiple sequence alignment