Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ABH13_RS11840 Genome accession   NZ_CP011686
Coordinates   2498176..2498511 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain G341     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2493176..2503511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH13_RS11820 (ABH13_2396) gcvT 2493782..2494882 (-) 1101 WP_025284994.1 glycine cleavage system aminomethyltransferase GcvT -
  ABH13_RS11825 (ABH13_2397) - 2495306..2496976 (+) 1671 WP_007408331.1 DEAD/DEAH box helicase -
  ABH13_RS11830 (ABH13_2398) - 2496998..2497792 (+) 795 WP_007408330.1 YqhG family protein -
  ABH13_RS11835 (ABH13_2399) sinI 2497969..2498142 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  ABH13_RS11840 (ABH13_2400) sinR 2498176..2498511 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ABH13_RS11845 (ABH13_2401) tasA 2498559..2499344 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  ABH13_RS11850 (ABH13_2402) sipW 2499409..2499993 (-) 585 WP_015240205.1 signal peptidase I SipW -
  ABH13_RS11855 (ABH13_2403) tapA 2499965..2500636 (-) 672 WP_047935952.1 amyloid fiber anchoring/assembly protein TapA -
  ABH13_RS11860 (ABH13_2404) - 2500895..2501224 (+) 330 WP_047935954.1 DUF3889 domain-containing protein -
  ABH13_RS11865 (ABH13_2405) - 2501264..2501443 (-) 180 WP_003153093.1 YqzE family protein -
  ABH13_RS11870 (ABH13_2406) comGG 2501500..2501877 (-) 378 WP_032866434.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABH13_RS11875 (ABH13_2407) comGF 2501878..2502378 (-) 501 WP_257645080.1 competence type IV pilus minor pilin ComGF -
  ABH13_RS11880 (ABH13_2408) comGE 2502287..2502601 (-) 315 WP_007408323.1 competence type IV pilus minor pilin ComGE -
  ABH13_RS11885 (ABH13_2409) comGD 2502585..2503022 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABH13_RS11890 (ABH13_2410) comGC 2503012..2503320 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=147456 ABH13_RS11840 WP_003153104.1 2498176..2498511(+) (sinR) [Bacillus velezensis strain G341]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=147456 ABH13_RS11840 WP_003153104.1 2498176..2498511(+) (sinR) [Bacillus velezensis strain G341]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment