Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ABH13_RS10610 Genome accession   NZ_CP011686
Coordinates   2218228..2218836 (+) Length   202 a.a.
NCBI ID   WP_007409489.1    Uniprot ID   -
Organism   Bacillus velezensis strain G341     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2213228..2223836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH13_RS10570 (ABH13_2141) - 2214281..2214787 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  ABH13_RS10575 (ABH13_2142) - 2214926..2215339 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  ABH13_RS10580 (ABH13_2143) - 2215369..2215803 (-) 435 WP_032866289.1 YppG family protein -
  ABH13_RS10585 (ABH13_2144) - 2215990..2216172 (+) 183 WP_003153532.1 YppF family protein -
  ABH13_RS10590 (ABH13_2145) - 2216211..2216579 (-) 369 WP_007409492.1 YppE family protein -
  ABH13_RS10595 (ABH13_2146) - 2216625..2216870 (-) 246 WP_007409491.1 DUF5446 family protein -
  ABH13_RS10600 (ABH13_2147) sspM 2217076..2217180 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  ABH13_RS10605 (ABH13_2148) - 2217224..2218186 (-) 963 WP_032866291.1 DUF2515 domain-containing protein -
  ABH13_RS10610 (ABH13_2149) recU 2218228..2218836 (+) 609 WP_007409489.1 Holliday junction resolvase RecU Machinery gene
  ABH13_RS10615 (ABH13_2150) - 2218875..2221658 (+) 2784 WP_042635292.1 PBP1A family penicillin-binding protein -
  ABH13_RS10620 (ABH13_2151) - 2221736..2222227 (-) 492 WP_015240085.1 YpoC family protein -
  ABH13_RS10625 (ABH13_2152) nth 2222224..2222883 (-) 660 WP_047935888.1 endonuclease III -
  ABH13_RS10630 (ABH13_2153) dnaD 2222902..2223600 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23694.81 Da        Isoelectric Point: 9.5778

>NTDB_id=147452 ABH13_RS10610 WP_007409489.1 2218228..2218836(+) (recU) [Bacillus velezensis strain G341]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLVNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=147452 ABH13_RS10610 WP_007409489.1 2218228..2218836(+) (recU) [Bacillus velezensis strain G341]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGTTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment