Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABH13_RS08140 Genome accession   NZ_CP011686
Coordinates   1628203..1629102 (+) Length   299 a.a.
NCBI ID   WP_042635190.1    Uniprot ID   -
Organism   Bacillus velezensis strain G341     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1623203..1634102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH13_RS08120 (ABH13_1616) - 1623893..1625596 (+) 1704 WP_047935710.1 hypothetical protein -
  ABH13_RS08125 (ABH13_1617) - 1625593..1625874 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  ABH13_RS08130 (ABH13_1618) sucC 1626049..1627206 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  ABH13_RS08135 (ABH13_1619) sucD 1627235..1628137 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  ABH13_RS08140 (ABH13_1620) dprA 1628203..1629102 (+) 900 WP_042635190.1 DNA-processing protein DprA Machinery gene
  ABH13_RS08145 (ABH13_1621) topA 1629284..1631359 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  ABH13_RS08150 (ABH13_1622) trmFO 1631424..1632731 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABH13_RS08155 (ABH13_1623) xerC 1632801..1633718 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32878.05 Da        Isoelectric Point: 8.1570

>NTDB_id=147447 ABH13_RS08140 WP_042635190.1 1628203..1629102(+) (dprA) [Bacillus velezensis strain G341]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPNPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWIIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=147447 ABH13_RS08140 WP_042635190.1 1628203..1629102(+) (dprA) [Bacillus velezensis strain G341]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGAATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGATCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368

Multiple sequence alignment