Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ABH13_RS07080 Genome accession   NZ_CP011686
Coordinates   1376639..1377103 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain G341     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1371639..1382103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH13_RS07065 (ABH13_1396) - 1372120..1373940 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  ABH13_RS07070 (ABH13_1397) - 1373921..1375134 (-) 1214 Protein_1347 aminotransferase A -
  ABH13_RS20665 (ABH13_1398) - 1375335..1375496 (-) 162 WP_007409608.1 hypothetical protein -
  ABH13_RS07075 (ABH13_1399) cheV 1375685..1376596 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  ABH13_RS07080 (ABH13_1400) kre 1376639..1377103 (-) 465 WP_003154622.1 YkyB family protein Regulator
  ABH13_RS07085 (ABH13_1401) - 1377226..1378518 (-) 1293 WP_047935667.1 MFS transporter -
  ABH13_RS07090 (ABH13_1402) - 1378594..1379088 (-) 495 WP_088462390.1 L,D-transpeptidase family protein -
  ABH13_RS07095 (ABH13_1403) - 1379163..1380026 (-) 864 WP_047935668.1 metallophosphoesterase -
  ABH13_RS07100 (ABH13_1404) fadH 1380171..1380935 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  ABH13_RS07105 (ABH13_1405) - 1381049..1381597 (+) 549 WP_007409614.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=147444 ABH13_RS07080 WP_003154622.1 1376639..1377103(-) (kre) [Bacillus velezensis strain G341]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=147444 ABH13_RS07080 WP_003154622.1 1376639..1377103(-) (kre) [Bacillus velezensis strain G341]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAGTCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment