Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CLSPOx_RS19120 Genome accession   NZ_CP011663
Coordinates   4125039..4125485 (-) Length   148 a.a.
NCBI ID   WP_003495585.1    Uniprot ID   A0AAU8Z124
Organism   Clostridium sporogenes strain DSM 795     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4120039..4130485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLSPOx_RS19095 (CLSPOx_19095) rplI 4120866..4121309 (-) 444 WP_003359455.1 50S ribosomal protein L9 -
  CLSPOx_RS19100 (CLSPOx_19100) - 4121309..4123294 (-) 1986 WP_003495591.1 DHH family phosphoesterase -
  CLSPOx_RS19105 (CLSPOx_19105) - 4123295..4124302 (-) 1008 WP_003495589.1 YybS family protein -
  CLSPOx_RS19110 (CLSPOx_19110) - 4124314..4124631 (-) 318 WP_003495587.1 MazG-like family protein -
  CLSPOx_RS19115 (CLSPOx_19115) rpsR 4124778..4125020 (-) 243 WP_003488080.1 30S ribosomal protein S18 -
  CLSPOx_RS19120 (CLSPOx_19120) ssbA 4125039..4125485 (-) 447 WP_003495585.1 single-stranded DNA-binding protein Machinery gene
  CLSPOx_RS19125 (CLSPOx_19125) rpsF 4125501..4125785 (-) 285 WP_003488078.1 30S ribosomal protein S6 -
  CLSPOx_RS19130 (CLSPOx_19130) - 4125891..4127039 (-) 1149 WP_003495583.1 double-cubane-cluster-containing anaerobic reductase -
  CLSPOx_RS19135 (CLSPOx_19135) - 4127076..4128224 (-) 1149 WP_003495581.1 double-cubane-cluster-containing anaerobic reductase -
  CLSPOx_RS19140 (CLSPOx_19140) - 4128546..4128743 (-) 198 WP_003397342.1 DUF951 domain-containing protein -
  CLSPOx_RS19145 (CLSPOx_19145) - 4128759..4129628 (-) 870 WP_003495578.1 mechanosensitive ion channel family protein -
  CLSPOx_RS19150 (CLSPOx_19150) - 4129635..4129880 (-) 246 WP_003495576.1 DUF3343 domain-containing protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16353.16 Da        Isoelectric Point: 4.7821

>NTDB_id=147364 CLSPOx_RS19120 WP_003495585.1 4125039..4125485(-) (ssbA) [Clostridium sporogenes strain DSM 795]
MNKVVLIGRLTKDPELRFTPGNGTAVATFTLAVDRRFSKDGQREADFIPIVVWGKQAESTANYMSKGKLMGVSGRIQTRS
YEAKDGTRRYVTEVIAEEVKFLEWGNKPTTDSTYNNGSEPSYQSGQGFGNGNSFDDDIIPVDDGDIPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=147364 CLSPOx_RS19120 WP_003495585.1 4125039..4125485(-) (ssbA) [Clostridium sporogenes strain DSM 795]
TTGAATAAAGTTGTTTTAATAGGTAGATTAACCAAAGATCCTGAGTTAAGATTTACTCCAGGAAATGGGACAGCAGTTGC
CACCTTTACTTTGGCTGTAGATAGAAGGTTTTCAAAAGATGGCCAGAGAGAAGCAGATTTCATCCCTATAGTAGTATGGG
GAAAACAAGCAGAATCTACAGCTAATTATATGAGTAAAGGAAAACTTATGGGTGTTAGTGGTAGAATTCAAACAAGAAGC
TATGAAGCTAAAGATGGTACAAGAAGATATGTAACAGAAGTCATAGCTGAAGAAGTTAAATTTCTTGAGTGGGGCAATAA
GCCTACAACGGATTCAACATATAATAATGGGTCAGAACCAAGTTACCAATCAGGCCAAGGCTTTGGAAATGGAAACAGTT
TTGACGACGATATAATTCCAGTGGATGATGGAGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.419

100

0.574
  ssb Latilactobacillus sakei subsp. sakei 23K

47.015

90.541

0.426
  ssb Neisseria meningitidis MC58

34.104

100

0.399
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.311

69.595

0.392
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.398

69.595

0.372

Multiple sequence alignment