Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB183_RS07095 Genome accession   NZ_CP011657
Coordinates   1020112..1020726 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain CAV1741     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1015112..1025726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB183_RS07080 (AB183_07080) helD 1015336..1017390 (-) 2055 WP_044700756.1 DNA helicase IV -
  AB183_RS07085 (AB183_07085) - 1017516..1017962 (+) 447 WP_003035892.1 YccF domain-containing protein -
  AB183_RS07090 (AB183_07090) yccS 1017981..1020134 (+) 2154 WP_032941200.1 YccS family putative transporter -
  AB183_RS07095 (AB183_07095) sxy/tfoX 1020112..1020726 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  AB183_RS07100 (AB183_07100) sulA 1020944..1021453 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  AB183_RS07105 (AB183_07105) ompA 1021811..1022869 (+) 1059 WP_003836839.1 porin OmpA -
  AB183_RS07110 (AB183_07110) matP 1022961..1023413 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  AB183_RS07115 (AB183_07115) - 1023599..1025359 (+) 1761 WP_003035878.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=147297 AB183_RS07095 WP_003035889.1 1020112..1020726(-) (sxy/tfoX) [Citrobacter freundii strain CAV1741]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=147297 AB183_RS07095 WP_003035889.1 1020112..1020726(-) (sxy/tfoX) [Citrobacter freundii strain CAV1741]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATTTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGCATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment