Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB181_RS09145 Genome accession   NZ_CP011618
Coordinates   1431299..1431922 (-) Length   207 a.a.
NCBI ID   WP_004100775.1    Uniprot ID   A0AAD3YQU3
Organism   Klebsiella oxytoca strain CAV1335     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1426299..1436922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB181_RS09130 (AB181_09120) helD 1426535..1428589 (-) 2055 WP_016808043.1 DNA helicase IV -
  AB181_RS09135 (AB181_09125) - 1428712..1429158 (+) 447 WP_004100782.1 YccF domain-containing protein -
  AB181_RS09140 (AB181_09130) yccS 1429176..1431311 (+) 2136 WP_004100780.1 YccS family putative transporter -
  AB181_RS09145 (AB181_09135) sxy/tfoX 1431299..1431922 (-) 624 WP_004100775.1 TfoX/Sxy family DNA transformation protein Regulator
  AB181_RS09150 (AB181_09140) sulA 1432384..1432893 (+) 510 WP_024273980.1 SOS-induced cell division inhibitor SulA -
  AB181_RS09155 (AB181_09145) ompA 1433247..1434317 (+) 1071 WP_004100770.1 porin OmpA -
  AB181_RS09160 (AB181_09150) matP 1434428..1434880 (-) 453 WP_004100768.1 macrodomain Ter protein MatP -
  AB181_RS09165 (AB181_09155) - 1435066..1436823 (+) 1758 WP_017146190.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23688.71 Da        Isoelectric Point: 10.2095

>NTDB_id=147179 AB181_RS09145 WP_004100775.1 1431299..1431922(-) (sxy/tfoX) [Klebsiella oxytoca strain CAV1335]
MKKLVCLRIHQFRACLSPLGKISCRPLFGGYSLAIDNTVFAMMAEGEIYLRVCEQSAQYRVAHKNPLLKMQKNGRLVALK
YYHIDEGLWRDSKMLFHLSALSLQTARNEKHRQRHSGRLKNLPNISFHMELQLINSGIKDELTLRKIGAKEAWLRLRKMN
KALTVNVLYSLEGAIAGVHAATLPTQQRQELEEWAAVQVQEMEAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=147179 AB181_RS09145 WP_004100775.1 1431299..1431922(-) (sxy/tfoX) [Klebsiella oxytoca strain CAV1335]
ATGAAGAAACTCGTATGTCTTAGGATCCATCAGTTTCGGGCATGTTTGTCTCCATTAGGAAAAATAAGCTGTCGGCCCTT
ATTTGGTGGCTATAGCCTGGCGATAGATAATACCGTGTTTGCCATGATGGCTGAGGGGGAGATCTATCTTCGGGTTTGTG
AGCAGAGTGCGCAGTATCGCGTGGCGCATAAAAACCCGCTGTTGAAGATGCAGAAGAATGGCCGTCTGGTTGCGCTTAAG
TACTATCATATAGATGAAGGGCTTTGGCGTGACAGCAAAATGCTTTTTCATTTATCAGCGCTATCATTACAGACCGCTCG
TAATGAAAAACATCGGCAGCGACATTCCGGAAGATTAAAGAATCTTCCAAATATTAGTTTTCACATGGAGCTCCAGTTGA
TTAATTCAGGTATCAAAGATGAATTAACGCTGCGAAAAATTGGCGCTAAAGAAGCCTGGCTCAGACTACGAAAAATGAAT
AAAGCGCTAACGGTAAACGTCCTTTATTCATTAGAGGGAGCTATTGCGGGCGTGCATGCGGCCACGCTCCCGACGCAACA
GCGTCAGGAGCTTGAGGAGTGGGCGGCGGTACAGGTACAGGAGATGGAGGCCTACTCAGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(15-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.308

94.203

0.493

Multiple sequence alignment