Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB180_RS03020 Genome accession   NZ_CP011612
Coordinates   10912..11526 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain CAV1321     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 5912..16526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB180_RS03000 (AB180_03000) - 6279..8039 (-) 1761 WP_003035878.1 Lon protease family protein -
  AB180_RS03005 (AB180_03005) matP 8225..8677 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  AB180_RS03010 (AB180_03010) ompA 8769..9827 (-) 1059 WP_003836839.1 porin OmpA -
  AB180_RS03015 (AB180_03015) sulA 10185..10694 (-) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  AB180_RS03020 (AB180_03020) sxy/tfoX 10912..11526 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  AB180_RS03025 (AB180_03025) yccS 11504..13657 (-) 2154 WP_032941200.1 YccS family putative transporter -
  AB180_RS03030 (AB180_03030) - 13676..14122 (-) 447 WP_003035892.1 YccF domain-containing protein -
  AB180_RS03035 (AB180_03035) helD 14248..16302 (+) 2055 WP_044700756.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=147156 AB180_RS03020 WP_003035889.1 10912..11526(+) (sxy/tfoX) [Citrobacter freundii strain CAV1321]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=147156 AB180_RS03020 WP_003035889.1 10912..11526(+) (sxy/tfoX) [Citrobacter freundii strain CAV1321]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATTTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGCATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment