Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB182_RS16185 Genome accession   NZ_CP011602
Coordinates   2687518..2688123 (-) Length   201 a.a.
NCBI ID   WP_047370998.1    Uniprot ID   A0AAC8QPV5
Organism   Phytobacter ursingii strain CAV1151     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2682518..2693123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB182_RS16170 (AB182_16185) helD 2682736..2684790 (-) 2055 WP_047370995.1 DNA helicase IV -
  AB182_RS16175 (AB182_16190) - 2684914..2685360 (+) 447 WP_047370996.1 YccF domain-containing protein -
  AB182_RS16180 (AB182_16195) yccS 2685377..2687506 (+) 2130 WP_047370997.1 YccS family putative transporter -
  AB182_RS16185 (AB182_16200) sxy/tfoX 2687518..2688123 (-) 606 WP_047370998.1 TfoX/Sxy family DNA transformation protein Regulator
  AB182_RS16190 (AB182_16205) sulA 2688342..2688842 (+) 501 WP_047370999.1 SOS-induced cell division inhibitor SulA -
  AB182_RS16195 (AB182_16210) ompA 2689209..2690267 (+) 1059 WP_047371000.1 porin OmpA -
  AB182_RS16200 (AB182_16215) matP 2690342..2690794 (-) 453 WP_047371001.1 macrodomain Ter protein MatP -
  AB182_RS16205 (AB182_16220) - 2690978..2692738 (+) 1761 WP_047371002.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23247.01 Da        Isoelectric Point: 9.8223

>NTDB_id=147145 AB182_RS16185 WP_047370998.1 2687518..2688123(-) (sxy/tfoX) [Phytobacter ursingii strain CAV1151]
MKNISYQRIYQSREYLAPLGKIRFRAHFGGYSLSIDNTVFAMISEGELYLRACEESAQYRVTTRSPLLTIQKRGRAVSLN
YYFVDEHLWRDLPTLLRLSSQSLAAARQEKTARDTPHRLKDLPNMNFQLEMMLFDAGIPDEHMLRQLGAKACWLRLKAMN
KHMGIKVLLGLEGAIIGLHEAALPALRRQELIDWYHEIGQK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=147145 AB182_RS16185 WP_047370998.1 2687518..2688123(-) (sxy/tfoX) [Phytobacter ursingii strain CAV1151]
ATGAAAAACATATCGTATCAAAGGATCTATCAGTCACGGGAATACCTCGCGCCTTTGGGAAAAATTCGCTTTCGCGCGCA
TTTTGGCGGCTACAGTTTATCGATAGACAACACGGTGTTTGCGATGATTTCAGAGGGTGAATTATACCTGCGTGCCTGCG
AGGAGAGTGCCCAGTATCGGGTAACAACACGTTCACCCCTTCTGACAATCCAGAAGCGTGGTCGCGCCGTTTCCCTTAAC
TACTACTTTGTTGATGAGCATCTCTGGCGTGACTTGCCAACACTGTTGCGGCTTTCATCGCAATCACTCGCGGCGGCCCG
GCAGGAAAAAACGGCGCGTGATACGCCTCATCGTCTTAAGGATCTACCAAACATGAACTTCCAACTTGAGATGATGCTTT
TCGATGCCGGTATACCGGACGAACATATGCTGCGACAACTGGGTGCCAAAGCGTGTTGGTTGCGTTTGAAGGCGATGAAC
AAACATATGGGCATCAAGGTACTCCTGGGCCTGGAAGGTGCGATCATCGGTCTGCACGAAGCCGCACTCCCGGCGTTGAG
ACGCCAGGAGTTAATCGACTGGTACCACGAGATTGGCCAGAAATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.204

100

0.592

Multiple sequence alignment