Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABY64_RS06720 Genome accession   NZ_CP011584
Coordinates   1289715..1290341 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei strain CAV1668     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1284715..1295341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABY64_RS06700 (ABY64_06690) - 1285114..1286874 (-) 1761 WP_017384808.1 Lon protease family protein -
  ABY64_RS06705 (ABY64_06695) matP 1287061..1287513 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  ABY64_RS06710 (ABY64_06700) ompA 1287579..1288631 (-) 1053 WP_017694761.1 porin OmpA -
  ABY64_RS06715 (ABY64_06705) sulA 1288988..1289497 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  ABY64_RS06720 (ABY64_06710) sxy/tfoX 1289715..1290341 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  ABY64_RS06725 (ABY64_06715) yccS 1290298..1292460 (-) 2163 WP_015570895.1 YccS family putative transporter -
  ABY64_RS06730 (ABY64_06720) - 1292479..1292925 (-) 447 WP_003858149.1 YccF domain-containing protein -
  ABY64_RS06735 (ABY64_06725) helD 1293048..1295102 (+) 2055 WP_032619959.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=147064 ABY64_RS06720 WP_017384804.1 1289715..1290341(+) (sxy/tfoX) [Enterobacter hormaechei strain CAV1668]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=147064 ABY64_RS06720 WP_017384804.1 1289715..1290341(+) (sxy/tfoX) [Enterobacter hormaechei strain CAV1668]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAATCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572

Multiple sequence alignment