Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   AYM28_RS01975 Genome accession   NZ_CP014415
Coordinates   414866..415711 (+) Length   281 a.a.
NCBI ID   WP_001550052.1    Uniprot ID   A0A0H2XGE1
Organism   Staphylococcus aureus strain USA300-SUR15     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 409866..420711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYM28_RS01955 (AYM28_01895) - 410132..411973 (-) 1842 WP_000077318.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -
  AYM28_RS01960 (AYM28_01900) metC 411942..413102 (-) 1161 WP_000175846.1 cystathionine beta-lyase MetC -
  AYM28_RS01965 (AYM28_01905) - 413099..414202 (-) 1104 WP_000655692.1 PLP-dependent transferase -
  AYM28_RS01975 (AYM28_01910) spo0J 414866..415711 (+) 846 WP_001550052.1 ParB/RepB/Spo0J family partition protein Regulator
  AYM28_RS01980 (AYM28_01915) - 415868..416749 (+) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  AYM28_RS01985 (AYM28_01920) - 416779..416982 (+) 204 WP_000157345.1 DUF951 domain-containing protein -
  AYM28_RS01990 (AYM28_01925) ychF 416994..418091 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  AYM28_RS01995 (AYM28_01930) - 418177..418368 (-) 192 WP_001052483.1 hypothetical protein -
  AYM28_RS02005 (AYM28_01935) rpsF 418612..418908 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  AYM28_RS02010 (AYM28_01940) ssbA 418929..419432 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  AYM28_RS02015 (AYM28_01945) rpsR 419484..419726 (+) 243 WP_000897044.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32855.86 Da        Isoelectric Point: 10.0091

>NTDB_id=146830 AYM28_RS01975 WP_001550052.1 414866..415711(+) (spo0J) [Staphylococcus aureus strain USA300-SUR15]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGTKVDISIKKSVGKISFEFDSQEDFVRIIEQLNRRYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=146830 AYM28_RS01975 WP_001550052.1 414866..415711(+) (spo0J) [Staphylococcus aureus strain USA300-SUR15]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGAATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAACGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTGCCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTCAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAGCAAGAACGACAGTTGCGA
GAACAGTATGGTACCAAAGTAGATATATCAATAAAAAAATCGGTTGGTAAAATCTCATTTGAGTTTGATTCACAAGAAGA
TTTTGTGAGAATAATTGAACAATTAAATCGTAGGTATGGTAAATAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(22-109)

HTH domain found in ParB protein (HTH_ParB)

(161-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XGE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.379

92.883

0.384

Multiple sequence alignment