Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ABA10_RS13730 Genome accession   NZ_CP011534
Coordinates   2661921..2662667 (-) Length   248 a.a.
NCBI ID   WP_080344219.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2656921..2667667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS13705 (ABA10_13705) mreC 2657327..2658199 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  ABA10_RS13710 (ABA10_13710) mreB 2658230..2659243 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ABA10_RS13715 (ABA10_13715) radC 2659335..2660030 (-) 696 WP_015384272.1 DNA repair protein RadC -
  ABA10_RS13720 (ABA10_13720) maf 2660067..2660636 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  ABA10_RS13725 (ABA10_13725) spoIIB 2660789..2661787 (-) 999 WP_047182972.1 stage II sporulation protein SpoIIB -
  ABA10_RS13730 (ABA10_13730) comC 2661921..2662667 (-) 747 WP_080344219.1 A24 family peptidase Machinery gene
  ABA10_RS13735 (ABA10_13735) folC 2662807..2664099 (-) 1293 WP_015384275.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ABA10_RS13740 (ABA10_13740) valS 2664159..2666801 (-) 2643 WP_015483523.1 valine--tRNA ligase -
  ABA10_RS13745 (ABA10_13745) - 2667249..2667440 (+) 192 WP_047182973.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26403.00 Da        Isoelectric Point: 9.7944

>NTDB_id=146760 ABA10_RS13730 WP_080344219.1 2661921..2662667(-) (comC) [Bacillus subtilis strain UD1022]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLIQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPALVFISLLIIVAVTDLHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=146760 ABA10_RS13730 WP_080344219.1 2661921..2662667(-) (comC) [Bacillus subtilis strain UD1022]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTAATTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTCTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(100-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

98.387

100

0.984

Multiple sequence alignment